Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001998-TA|BGIBMGA001998-PA|IPR009637|Lung seven
transmembrane receptor
(380 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0225 - 1727461-1728825 249 2e-66
01_06_1266 - 35865046-35866395 219 2e-57
02_04_0632 + 24614659-24615528,24615636-24616133 214 9e-56
05_05_0126 + 22574191-22575567 213 2e-55
04_04_0461 + 25390552-25391904 212 3e-55
01_06_1265 - 35862180-35863007 118 1e-26
09_04_0267 - 16246512-16246689,16247047-16247183,16247376-162474... 55 1e-07
11_06_0032 + 19432305-19432510,19433390-19434326,19434880-194349... 38 0.013
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 37 0.023
01_06_0511 + 29937167-29937264,29937362-29937577,29937938-299380... 31 2.0
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 29 4.7
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 29 6.2
03_03_0233 - 15656930-15656998,15657459-15657591,15657677-156577... 29 6.2
>06_01_0225 - 1727461-1728825
Length = 454
Score = 249 bits (610), Expect = 2e-66
Identities = 126/307 (41%), Positives = 184/307 (59%), Gaps = 11/307 (3%)
Query: 48 EEGLYNLYFNNCPYKGEGNPTPVNAIIEIFE--SNEGNYLSAGEIPLPLLYAVTSSIFLF 105
E G Y L F NC G V + + + + E +YLSAG LP ++ +
Sbjct: 142 EPGQYTLVFANCLGGGLKVSMDVRSAMYNVDPPTGERSYLSAGATALPTIFGFFGVAYAA 201
Query: 106 CAILWTYILKTSRQTVFRIHIIMCILVYLKAASLAFHGINYHFIQIRGEHVTAWAILYYI 165
A W IL R VFRIH M ++ LKA +L + +I+ G W +L+YI
Sbjct: 202 LAAGWIAILLRKRAAVFRIHYFMLAVLVLKAVNLLAEAEDKSYIERTGT-AHGWDVLFYI 260
Query: 166 THLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIVIPLQ-----AEIILAESEEGAV 220
LKG LF IVL+GTGW+F+K L+DR+KK+ M+VIPLQ A++++ ES A
Sbjct: 261 FSFLKGISLFTLIVLIGTGWSFLKPYLADREKKVLMVVIPLQVVANIAQVVIDESGPYAR 320
Query: 221 EHNAWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVAC 280
W+ + ++V+++CC A++FP+VWSI++L++A+ +DGKAA+NL KL LF+ +YV+V C
Sbjct: 321 AWVTWKQVLLLVDVICCCAVLFPIVWSIKNLREAARSDGKAAVNLMKLTLFRQYYVVVIC 380
Query: 281 YIYFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPYFTPTHFDDV 340
YIYFTR+VV+ L ++Y W + +ELATL F++ TGYKFRP NPYF DD
Sbjct: 381 YIYFTRVVVYALMTITSYRYQWTSYVAKELATLAFYVFTGYKFRPEVHNPYFA---IDDE 437
Query: 341 KPEVLSD 347
+ E ++
Sbjct: 438 EEEAAAE 444
>01_06_1266 - 35865046-35866395
Length = 449
Score = 219 bits (536), Expect = 2e-57
Identities = 112/290 (38%), Positives = 172/290 (59%), Gaps = 13/290 (4%)
Query: 52 YNLYFNNCPYKGEGNPTPVNAIIEIFESN-EGN--YLSAGEIPLPLLYAVTSSIFLFCAI 108
Y+L+F NC + + +++ +N +G+ YLS G+ P+P +YA + +L
Sbjct: 143 YSLFFANCAPE---TAVTMEVRTDMYNTNLDGSKDYLSVGQAPVPAIYAFFTVCYLVFLA 199
Query: 109 LWTYI-LKTSRQTVFRIHIIMCILVYLKAASLAFHGINYHFIQIRGEHVTAWAILYYITH 167
+W Y+ L +R + RIH +M L+ + + H+I+I G W +++Y+
Sbjct: 200 VWLYVTLYRNRLSAHRIHHLMSGLLAARMLYCISAAEDQHYIRIAGTP-HGWDVMFYLFQ 258
Query: 168 LLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIVIPLQAEIILAES---EEGAVEHN- 223
L+KG +LF I L+GTGW+F+K L D++KK+ M+VIPLQ +A + E G
Sbjct: 259 LVKGVILFAVIALIGTGWSFLKPFLQDKEKKVLMVVIPLQVAANIAAAVVGETGPFLQGW 318
Query: 224 -AWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVACYI 282
W IF+ V++ CC A++FPVVWS+R L+++S TDGKAA L KL LF+ FYV+V Y+
Sbjct: 319 VTWNQIFLFVDVACCCAVLFPVVWSMRSLRESSKTDGKAARTLAKLTLFRQFYVVVIGYL 378
Query: 283 YFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPYF 332
YFTRI+V+ LK ++Y W+ E+AT+ F+L Y FRPA N YF
Sbjct: 379 YFTRIIVYALKTITNYKYRWVSVAAEEVATVAFYLFMFYMFRPAERNQYF 428
>02_04_0632 + 24614659-24615528,24615636-24616133
Length = 455
Score = 214 bits (523), Expect = 9e-56
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 15/291 (5%)
Query: 52 YNLYFNNCPYKGEGNPTPVNAIIEIFESNEG------NYLSAGEIPLPLLYAVTSSIFLF 105
Y + F+NC +G V+ E++ +G +YL G PLP +Y V S ++
Sbjct: 147 YAVVFSNCQ---DGVEVTVDVYTEMYNVRDGISDGPRDYLPVGLRPLPTIYTVVSEVYFA 203
Query: 106 CAILWTYILKTSRQTVFRIHIIMCILVYLKAASLAFHGINYHFIQIRGEHVTAWAILYYI 165
LW + R TV RIH +M L+ KA +A + +++ G W + +Y+
Sbjct: 204 FLALWACVCVRHRATVERIHAVMGALLLFKALKMACAAEDSWYVERTGTP-HGWDVAFYV 262
Query: 166 THLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIVIPLQAE-----IILAESEEGAV 220
KG +LF I+L+GTGW+ +K L +R+K + MIVIPLQ +++ E+
Sbjct: 263 FGFFKGVLLFTVIILIGTGWSILKPYLQEREKNMLMIVIPLQVVENLLLVVIGETGPTGQ 322
Query: 221 EHNAWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVAC 280
+ W +F++V+++CC A+ FP++WSIR +++AS TDGKAA+NL+KL LF+ FY++V
Sbjct: 323 DWVVWNQVFLLVDVICCCAVFFPIIWSIRSMREASKTDGKAALNLQKLTLFKRFYLVVVG 382
Query: 281 YIYFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPY 331
Y+YFTRI+ + ++Y W + E A+L F+L Y F+P A NPY
Sbjct: 383 YLYFTRIIASAFLALLSYKYQWGVNVAIEAASLAFYLFVFYNFQPVAKNPY 433
>05_05_0126 + 22574191-22575567
Length = 458
Score = 213 bits (520), Expect = 2e-55
Identities = 115/303 (37%), Positives = 175/303 (57%), Gaps = 18/303 (5%)
Query: 52 YNLYFNNCPYKGEGNPTPVNAIIEIFESN-EGN--YLSAGEIPLPLLYAVTSSIFLFCAI 108
Y+LYF NC + + + E++ N +G+ YL G+ P+P +Y ++ +
Sbjct: 150 YSLYFANCAPE---SLVTMRVRTEMYNGNADGSVDYLPVGQAPVPAIYGFFAACYAAFLA 206
Query: 109 LWTYILKTSRQTVFRIHIIMCILVYLKAASLAF---HGINYHFIQIRGEHVTAWAILYYI 165
W Y+ +SR H I ++ L AA L + + H+I++ G W + +Y+
Sbjct: 207 AWGYLTLSSRDHRAAAHQIHHLMSGLLAARLLYCLSAAEDQHYIRVTGTP-HGWDVAFYL 265
Query: 166 THLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIVIPLQ-----AEIILAESEEGAV 220
L+KG VLF IVLVGTGW+F++ +L DR+KK+ M+VIPLQ A ++ E+
Sbjct: 266 FQLVKGVVLFAVIVLVGTGWSFLRPVLQDREKKVLMVVIPLQVMANIASAVIGETGPFLQ 325
Query: 221 EHNAWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVAC 280
W I + V++ CC A++FPVVWS+R L++ S TDGKAA L KL LF+ FY++V
Sbjct: 326 GWVTWNQILLFVDVACCCAVLFPVVWSMRSLRETSKTDGKAARTLSKLTLFRQFYIVVIG 385
Query: 281 YIYFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPYFTPTHFDDV 340
Y+YFTRIVV+ LK +Q+ W+ + E+ATL F+L Y FRPA + YF+ FD+
Sbjct: 386 YLYFTRIVVYALKTIASYQFRWVSVLAEEVATLAFYLFMFYTFRPAERSRYFS---FDED 442
Query: 341 KPE 343
+ E
Sbjct: 443 EEE 445
>04_04_0461 + 25390552-25391904
Length = 450
Score = 212 bits (518), Expect = 3e-55
Identities = 99/253 (39%), Positives = 152/253 (60%), Gaps = 6/253 (2%)
Query: 84 YLSAGEIPLPLLYAVTSSIFLFCAILWTYILKTSRQTVFRIHIIMCILVYLKAASLAFHG 143
YL G +PLP ++A S+++ W + R T +IH +M L+ KA LA
Sbjct: 176 YLPVGLLPLPGIFAAASAVYFVFLGAWAWACARHRATAGQIHAVMGALLLFKALKLACAA 235
Query: 144 INYHFIQIRGEHVTAWAILYYITHLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIV 203
+ +++ G W + +Y+ KG +LF IVL+GTGW+F+K L +R+KK+ MIV
Sbjct: 236 EDAWYVERTGTP-HGWDVAFYVFGFFKGVLLFTVIVLIGTGWSFLKPYLQEREKKVLMIV 294
Query: 204 IPLQ-----AEIILAESEEGAVEHNAWRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTD 258
IPLQ A ++ E+ + AW IF++V+++CC A+ FP++WSIR+L++AS TD
Sbjct: 295 IPLQVVENIASAVIGETGPAGRDWLAWNQIFLLVDVICCCAVFFPIIWSIRNLREASKTD 354
Query: 259 GKAAINLRKLKLFQHFYVMVACYIYFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLM 318
GKAA NL+KL LF+ FY++V Y+YFTRI V + ++Y W+ + E A+L F++
Sbjct: 355 GKAARNLKKLTLFKQFYLVVVGYLYFTRIAVSAFAAVLSYRYQWVVTVAMEAASLAFYIF 414
Query: 319 TGYKFRPAAANPY 331
Y F+P NPY
Sbjct: 415 VFYNFKPVENNPY 427
>01_06_1265 - 35862180-35863007
Length = 275
Score = 118 bits (283), Expect = 1e-26
Identities = 82/261 (31%), Positives = 125/261 (47%), Gaps = 16/261 (6%)
Query: 74 IEIFESNEGNYLSAGEIPLPLLY--AVTSSIFLFCAILWTY-ILKTSRQTVFRIHIIMC- 129
+E+ +SN GE P+ ++Y AV +FL I W + L T +H +M
Sbjct: 5 VELSDSNP----DGGEDPVAMIYSFAVCYGVFL---IAWLHRTLARGCSTARPVHDVMSG 57
Query: 130 ILVYLKAASLAFHGINYHFIQIRGEHVTAWAILYYITHLLKGAVLFVTIVLVGTGWNFIK 189
+L L L + + + W + L+K A+LF + L+G GW+ +
Sbjct: 58 LLAALMLHCLTAAAHDGRYTSVVAGTARGWNVPCLALRLVKNAMLFPVVALIGAGWSLPE 117
Query: 190 HILSDRDKKLFMIVIPLQAEIILAE--SEEGAVEHNAWRDIFIVVELVCCVAIVFPVVWS 247
+ R+ + ++PLQ + +A S +G V W F++V+L CCVA++ P+ +
Sbjct: 118 PFVQARELNVLTAMVPLQVYMAIATTLSGDGGVAWT-WGHAFVLVQLACCVAVLMPMGRA 176
Query: 248 IRHLQDASTTDGKAAINLRKLKLFQHFYVMVACYIYFTRIVVFILKKTVRFQ--YSWMDE 305
IR L+ + TD KAA L KL LF+ Y+ VA Y+Y T + VFILK V Y W
Sbjct: 177 IRALRKEADTDDKAARRLGKLALFRQLYLAVAVYLYHTWMAVFILKLLVGASSGYRWASV 236
Query: 306 MFRELATLVFFLMTGYKFRPA 326
E A L F+L F PA
Sbjct: 237 AVDEAAALAFYLFMFCMFSPA 257
>09_04_0267 -
16246512-16246689,16247047-16247183,16247376-16247471,
16247658-16248579,16249396-16249455,16249860-16250125
Length = 552
Score = 54.8 bits (126), Expect = 1e-07
Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 31/301 (10%)
Query: 50 GLYNLYFNNCPYKGEGNPTPVNAIIEIFESNEGNYLSAGEIPLPLLYAVTSSIFLFCAIL 109
G+YN+YF +C G + + N YL PL + + S F+ I
Sbjct: 210 GMYNMYFIHCDPSLAGLEIEGQTVWK----NPTGYLPGRMAPLKNFFGIMSFAFVVLGIY 265
Query: 110 WTY-ILKTSRQTVFRIHIIMCILV--YLKAASLAFHGINYHFIQIRGEHVTAWAILYYIT 166
W Y +K R+ + + I ++ L+ + F ++ +R + +T WA+ +
Sbjct: 266 WFYQYMKFWREVLPLQNCITLVITLGMLEMSLWYFEYAEFNETGVRPKGITFWAVTF--- 322
Query: 167 HLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMI--VIPLQAEIILAESEEGAVEHNA 224
+K V V I++V G+ ++ L K+ M+ L EI+ GAV +
Sbjct: 323 GTVKRTVARVIILIVSMGYGVVRPSLGGLTSKVVMLGGTFFLATEILELVENLGAVNDLS 382
Query: 225 WRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDG-KAAINLRKLKLFQHFYVMVAC--- 280
+ +V V + F VVW L A T D +A ++ KL +++ F + +A
Sbjct: 383 GKARLFLVYPVAILDAAF-VVWIFISL--AKTLDKLQARRSMAKLDIYRKFTIALAVTVL 439
Query: 281 --------YIYFTRIVVFILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPYF 332
IYF VF R+QY+W+ F + + + Y + P+ + F
Sbjct: 440 VSIGWIGYEIYFKSTDVF----NERWQYAWIIPAFWHVLSFSLLCVISYLWAPSQNSMRF 495
Query: 333 T 333
T
Sbjct: 496 T 496
>11_06_0032 +
19432305-19432510,19433390-19434326,19434880-19434975,
19435518-19435654,19435888-19436056
Length = 514
Score = 37.9 bits (84), Expect = 0.013
Identities = 52/292 (17%), Positives = 115/292 (39%), Gaps = 21/292 (7%)
Query: 50 GLYNLYFNNCPYKGEGNPTPVNAIIEIFESNEGNYLSAGEIPLPLLYAVTSSIFLFCAIL 109
G+YNL+F +C K G + N G YL PL Y S +L ++
Sbjct: 175 GMYNLFFISCDPKLRGLSMSGKTVWR----NPGGYLPGRMAPLMKFYVFMSLAYLLVMVV 230
Query: 110 WTYILKTSRQTVFRIHIIMCILVYLKAASLA---FHGINYHFIQIRGEHVTAWAILYYIT 166
W+ + + I + +++ L + F +N++ +R +T W +
Sbjct: 231 WSSQYIRFWRDIMPIQNWITLIIALGLFEMTLWYFEYLNFNSSGVRPIGITTWVV---TV 287
Query: 167 HLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKLFMIVIP--LQAEIILAESEEGAVEHNA 224
++ + + I+ + G+ ++ L K+ ++ + L +E++ G + +
Sbjct: 288 GAIRKTISRLLILSISMGYGVVRPTLGGLTSKVLLLGLTYFLASELLDIAENVGTINDIS 347
Query: 225 WRDIFIVVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHF----YVMVAC 280
+ +V L F ++W L + +A + KL +++ F V V
Sbjct: 348 GKARLFLV-LPDAFLDAFLILWIFTSL-SRTLEKLQARRSSVKLDIYRKFTNALAVSVIA 405
Query: 281 YIYFTRIVVFILKK---TVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAAN 329
+ + V+ + R+Q +W+ F ++ V L+ Y + P+ ++
Sbjct: 406 SVAWIGYEVYFKATDPFSERWQSAWIITAFWDVLAFVLLLVICYLWAPSQSS 457
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 37.1 bits (82), Expect = 0.023
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 10/160 (6%)
Query: 43 ITSKKEEGLYNLYFNNCPYKGEGNPTPVNAIIEIFESNEGNYLSAGEIPLPLLYAVTSSI 102
+ S + G+Y LYF C + +G + N YL P+ Y S
Sbjct: 162 VVSINKTGMYYLYFMFCDPQLKGLKITGRTVWR----NPQGYLPGKMAPMMTFYGFMSLA 217
Query: 103 FLFCAILWTYILKTSRQTVFRIHIIMCILVYLKAASLAFHGINYHFIQIRGEH---VTAW 159
+L +LW + + ++H + ++ L +AF Y G +T W
Sbjct: 218 YLVLGLLWFLQFVRCWKDILQLHYHITAVIALGMCEMAFWYFEYANFNSTGNRPMAITLW 277
Query: 160 AILYYITHLLKGAVLFVTIVLVGTGWNFIKHILSDRDKKL 199
A+ + +K + + +++V G+ ++ L K+
Sbjct: 278 AVTF---TAVKKTISRLLLLVVSMGYGVVRPTLGGVTSKV 314
>01_06_0511 +
29937167-29937264,29937362-29937577,29937938-29938093,
29939614-29939671,29939768-29940085,29940160-29940399,
29940489-29940587,29940676-29940711,29941183-29941368,
29941442-29941709,29941805-29941911
Length = 593
Score = 30.7 bits (66), Expect = 2.0
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 109 LWTYILKTSRQTVFRIHIIMCILVYL----KAASLAFHGINYHFIQIR 152
LWT ++K T+F +H CI +++ KA L + G +H + R
Sbjct: 167 LWTRLIKLLYVTLFAVHFASCIYLWMAFHHKAKELTWIGSQFHGFEDR 214
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.5 bits (63), Expect = 4.7
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 17 LERGILEVNLVNFMMPSGPFGEFALYITSKKEEGLYNLYFNNCPYKGEGNPTPVNAIIEI 76
L R + E ++N + S F + + ++++ L +L+ N CP+ +G PT + I I
Sbjct: 959 LRRHMNESEVINMVAHSSEFEN--IVVREEEQDELESLFKNACPHDIKGGPTDKHGKISI 1016
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 LLKGAV-LFVTIVLVGTGWNFIKHILSDRDKKLFMIVIPLQAEIILAESEEGAVEHNAWR 226
++K + LF+ + WN++ + L+ R KL VI +++ ++ G + + +R
Sbjct: 89 IMKSVIQLFLLFYCICMAWNYVINYLATRGPKLQTFVIKSLIQLVCRITKFGWFDDDKFR 148
Query: 227 DI 228
DI
Sbjct: 149 DI 150
>03_03_0233 -
15656930-15656998,15657459-15657591,15657677-15657729,
15658640-15658690,15658790-15658859,15659009-15659223,
15660465-15660570,15660686-15660753,15660861-15661148,
15661253-15661408,15661450-15661544,15661632-15661788
Length = 486
Score = 29.1 bits (62), Expect = 6.2
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 1 MADDQRKYVDITTFGFLERGILEVNLVNFMMPSG 34
+AD Q+ ++D+ GF+++ V++ NF++ SG
Sbjct: 269 LADSQQSWIDL--LGFIDKKSASVDMYNFLLDSG 300
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.328 0.143 0.442
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,998,700
Number of Sequences: 37544
Number of extensions: 461977
Number of successful extensions: 1059
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 16
length of query: 380
length of database: 14,793,348
effective HSP length: 83
effective length of query: 297
effective length of database: 11,677,196
effective search space: 3468127212
effective search space used: 3468127212
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)
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