GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001998-TA|BGIBMGA001998-PA|IPR009637|Lung seven
transmembrane receptor
         (380 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12439| Best HMM Match : Transthyretin (HMM E-Value=7.7)             55   8e-08
SB_33975| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.002
SB_14644| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.1  
SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8)                     30   2.7  
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.7  
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.6  
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)          29   4.7  
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   29   4.7  

>SB_12439| Best HMM Match : Transthyretin (HMM E-Value=7.7)
          Length = 219

 Score = 55.2 bits (127), Expect = 8e-08
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 37  GEFALYITSKKEEGLYNLYFNNCP-YKGEGNPTPVNAIIEIFESNEGNYLSAGE 89
           G F + +  K EEGLYNLYF+NC  Y G+     V+  ++I E N+ NYLSAGE
Sbjct: 167 GNFTVMVKDKSEEGLYNLYFHNCANYLGK-TQVAVDIHVKIVEKNDENYLSAGE 219


>SB_33975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 102 IFLFCAILWTYILKTSRQTVFRIHIIMCILVYLKAASLAF 141
           +F   A  W YIL+ +R+  F++H +M +LV LK+  L F
Sbjct: 4   LFFITACYWFYILRRNREYTFKVHYMMFVLVLLKSLDLVF 43


>SB_14644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 11/108 (10%)

Query: 70  VNAIIEIFESNEGNYLSAGEIPLPLLYAV---TSSIFLFCAILWTYILKTSRQTVFRIHI 126
           +++I+ +   +   YLS   I  PLLY     T  ++++C I W Y    +   +  I  
Sbjct: 114 ISSIMHLMLLSVDKYLS---IARPLLYPTWMTTRKVYIYCLIAWIYSAFWALLPIIGISS 170

Query: 127 IMCILVYL-KAAS--LAFHGINYHFI--QIRGEHVTAWAILYYITHLL 169
             C + Y+ + AS   A +G+N  F    + G +  A  +++ +  LL
Sbjct: 171 YECFIPYIGECASEDWASNGLNLTFAVSVVTGTYGIALIVMFIVYVLL 218


>SB_29126| Best HMM Match : FUN14 (HMM E-Value=1.8)
          Length = 204

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 12  TTFGFLER---GILEVNLVNFMMPSGPFGEFALYITSKKEEGLYNLYFNN 58
           TT GFL     GI+ VN + F+ P G     A     + +  LY  Y+N+
Sbjct: 63  TTAGFLSPLLVGIVTVNKIEFLQPGGSTSSRAAATAVELQFALYESYYNS 112


>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 234  LVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQH--FYVMVAC-YIYFTRIVVF 290
            L  C   +F +  S+R+L   +      +++LR + L+    F + V+  ++Y   I +F
Sbjct: 1967 LYLCAFCIFALSVSLRYLYLCAICIFALSVSLRYICLYAICIFALSVSLRFLYLCAICIF 2026

Query: 291  ILKKTVRFQYSWMDEMFRELATLVFFLMTGYKFRPAAANPYFTPTHFDDVKPEVLSD 347
             L  ++RF Y  +  +F    +L   L       P ++NP   P    + KPEV +D
Sbjct: 2027 ALSVSLRFLY--LCAIFVFALSLSLRLYISVPCLPKSSNP---PEPRSEPKPEVDAD 2078


>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 278 VACYIYFTRIVVFILKKTVR-FQYSWMDEMFRELATLVFFL----MTGYKFRPAAANPYF 332
           V  Y Y   I+VFI+  TVR F Y+W    F ++      L    + GYK +P     Y 
Sbjct: 847 VVGYCYLPNIIVFIVPCTVRFFIYNWFILQFEDVDLGEILLHNVGLAGYK-KPTPVQKYA 905

Query: 333 TP 334
            P
Sbjct: 906 IP 907


>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
          Length = 655

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 93  PLLYAVTSSIFLFCAILWTYILKTSRQTVFR-IHI--IMCILVYLKAASLAFHGIN 145
           PL  A T S F FC I+      TSRQ   R +HI  I+C+++   A  L   G++
Sbjct: 375 PLGEATTLSFFHFCLIVNWIAYYTSRQRQRRLLHIIGIICLIICCVAFGLGVAGLS 430


>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 142 HGINYHFIQIRGEHVTAWAILYYITHLL-KGAVLFVTIVLVG 182
           HGI     QI G H   W I + +T L   G VLF  I L+G
Sbjct: 130 HGIG----QINGSHSPTWRIFWLLTFLAGLGMVLFQCITLLG 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.143    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,543,909
Number of Sequences: 59808
Number of extensions: 523305
Number of successful extensions: 1643
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 9
length of query: 380
length of database: 16,821,457
effective HSP length: 83
effective length of query: 297
effective length of database: 11,857,393
effective search space: 3521645721
effective search space used: 3521645721
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)