GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001998-TA|BGIBMGA001998-PA|IPR009637|Lung seven
transmembrane receptor
         (380 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   1.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   5.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.6  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 231 VVELVCCVAIVFPVVWSIRHLQDASTTDGKAAINLRKLKLFQHFYVMVACYIYFTRIVVF 290
           V++++  V I+F + W+  H Q       + +     L   +  Y++  C  YF+  +  
Sbjct: 268 VIKMLSAVVILFFICWAPFHTQRLLYVYAQESDYYPDLN--EWLYILSGCLYYFSTTINP 325

Query: 291 ILKKTVRFQY 300
           IL   +  +Y
Sbjct: 326 ILYNLMSIKY 335


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 43 ITSKKEEGLYNLYFNNCPYKGEGNPTPVNAIIEI 76
          IT   E  L N   N  P  G+G PT V   I I
Sbjct: 37 ITMVLENLLMNYENNQLPTHGKGTPTVVKTNILI 70


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 43  ITSKKEEGLYNLYFNNCPYKGEGNPTPV 70
           I S +  GL N+  +N    G   PTPV
Sbjct: 195 IESFEAAGLRNIVLDNIKKSGYKKPTPV 222


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 1   MADDQRKYVDITTFGFLERGILEV 24
           + D+ RK ++   FGF +RG++ V
Sbjct: 939 VTDETRKILEPFGFGFEQRGLVFV 962


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.143    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,596
Number of Sequences: 429
Number of extensions: 5409
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 380
length of database: 140,377
effective HSP length: 59
effective length of query: 321
effective length of database: 115,066
effective search space: 36936186
effective search space used: 36936186
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)