Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001996-TA|BGIBMGA001996-PA|IPR001452|Src homology-3,
IPR011511|Variant SH3
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 50 8e-07
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 50 1e-06
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 48 3e-06
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 48 4e-06
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 44 7e-05
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 44 7e-05
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 41 5e-04
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 41 6e-04
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 41 6e-04
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 39 0.002
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 39 0.003
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 37 0.010
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 35 0.031
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 35 0.041
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 35 0.041
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 30 1.2
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 29 2.1
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 3.6
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 28 4.8
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 28 4.8
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 4.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 4.8
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 27 6.3
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 27 6.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 6.3
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 8.3
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac... 27 8.3
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 8.3
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 50.4 bits (115), Expect = 8e-07
Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 580 PPKVDLPTLGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNF 639
P P + ALYDY A+A +L+ G I VVSR D + WW G NG G F
Sbjct: 401 PAPAAAPAAEHVVALYDYAAQAAGDLSFHAGDRIEVVSRT--DNQNEWWIGRLNGAQGQF 458
Query: 640 PSLIVE 645
P V+
Sbjct: 459 PGNYVQ 464
Score = 34.7 bits (76), Expect = 0.041
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDVD 512
ALY Y AQ +LS +++EVV D G +G P NY+ ++
Sbjct: 414 ALYDYAAQAAGDLSFHAGDRIEVVSRTDNQNEWWIGRLNGAQGQFPGNYVQLE 466
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 50.0 bits (114), Expect = 1e-06
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 590 YCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEE 646
Y ALY Y A++ EL+++EG II+V +RNA +GW G NG+ G FP+ V +
Sbjct: 588 YVKALYAYTAQSDMELSIQEGDIIQVTNRNA---GNGWSEGILNGVTGQFPANYVTD 641
Score = 41.1 bits (92), Expect = 5e-04
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYL 509
ALY+YTAQ+ ELSI E + ++V G+GW + G G P NY+
Sbjct: 591 ALYAYTAQSDMELSIQEGDIIQVTNRNAGNGWSEG-ILNGVTGQFPANYV 639
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 461 LYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDVDHDQASSAP 520
LY +T ++ ++ E ++ ++ DG GW++ + G +G +P +Y+ + +D+ +++
Sbjct: 523 LYDFTGEHEGVITASEGQEFTLLEPDDGSGWVRVK-IDGTDGLIPASYVKL-NDELNTSV 580
Query: 521 GLVSQISF--SSVDYTVEGEDADVVQSPDQISVISAPVG 557
L S+ + YT + + +Q D I V + G
Sbjct: 581 TLDGDSSYVKALYAYTAQSDMELSIQEGDIIQVTNRNAG 619
Score = 27.1 bits (57), Expect = 8.3
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 39 HQKLSSARKFTEGLAQAHKELQMTVGEVDKTKKLYFDEEHTAHDVRXXXXXXXXXXXXXX 98
HQKLS ++ +A+ K+L+ ++ +K+Y D +
Sbjct: 104 HQKLSD--DYSLDIAEKLKKLE---SHIEALRKVYDDLYKKFSSEKETLLNSVKRAKVSY 158
Query: 99 GSFFQSITSLQKNSAKVSSRRDQLEEKSTGA-----RNDYILSIAAANAHQNRYFLVDLQ 153
+ S ++ + K ++ Q K + + +N Y+L + NAH+ +++ L
Sbjct: 159 HEACDDLESARQKNDKYREQKTQRNLKLSESDMLDKKNKYLLRMLVYNAHKQKFYNETLP 218
Query: 154 TCMQNME 160
T + +M+
Sbjct: 219 TLLNHMQ 225
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 48.4 bits (110), Expect = 3e-06
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 461 LYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDV 511
+Y Y+ + +E+ ++ENEQ++++ E DGW N +G++G P NY+++
Sbjct: 733 IYDYSPEEENEIELVENEQIQIL-EFVDDGWWLGENSKGQQGLFPSNYVEI 782
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 593 ALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEE 646
A+YDY+A+ +EL+ E +II N VD WW GE +G G FPS VEE
Sbjct: 807 AIYDYQAQEDNELSFFEDEIIA----NVDCVDPNWWEGECHGHRGLFPSNYVEE 856
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 586 PTLGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGE-TNGIVGNFPSLIV 644
PT +YDY E +E+ L E + I+++ VDDGWW GE + G G FPS V
Sbjct: 725 PTKTPAIVIYDYSPEEENEIELVENEQIQILEF----VDDGWWLGENSKGQQGLFPSNYV 780
Query: 645 E 645
E
Sbjct: 781 E 781
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLD 510
A+Y Y AQ +ELS E+E + V D + W G G P NY++
Sbjct: 807 AIYDYQAQEDNELSFFEDEIIANVDCVDPNWW--EGECHGHRGLFPSNYVE 855
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 48.0 bits (109), Expect = 4e-06
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 586 PTLGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGE----TNGIVGNFPS 641
P LGY ALYDY+A+ +E++ ++G + V+ +DGWW GE N G FPS
Sbjct: 866 PILGYVIALYDYQAQIPEEISFQKGDTLMVLRTQ----EDGWWDGEIINVPNSKRGLFPS 921
Query: 642 LIVE 645
V+
Sbjct: 922 NFVQ 925
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGW 491
ALY Y AQ P+E+S + + L V+ + DGW
Sbjct: 873 ALYDYQAQIPEEISFQKGDTLMVLRTQE-DGW 903
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 44.0 bits (99), Expect = 7e-05
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 14/99 (14%)
Query: 457 KCTALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDVDHDQA 516
K ALY YT Q+ DE+S ++ L+ G+ D D W+ + G P NY V+ A
Sbjct: 84 KMKALYDYTQQSVDEISFQADQTLDCYGDTDSD-WILV-GFNNNFGLAPRNY--VEGMDA 139
Query: 517 SSAPGLVSQISFSSVDYTVEGEDADVVQSPDQISVISAP 555
SSAP +S + + G +A V +P+ S++S P
Sbjct: 140 SSAP--------ASQEPSASGVNAPTVSAPN--SMVSPP 168
Score = 40.7 bits (91), Expect = 6e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 459 TALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDVDHDQASS 518
T LY + A+ DEL++ N ++ +V + W K + G+EG VP N++ D + +
Sbjct: 514 TVLYDFIAEAADELTVKANMRVVIVNDTASSDWWKC-SVDGKEGVVPSNFIKPDTEGDAK 572
Query: 519 AP 520
+P
Sbjct: 573 SP 574
Score = 33.9 bits (74), Expect = 0.072
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 594 LYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVE 645
LYD+ AEA DEL ++ + +V+ A WW+ +G G PS ++
Sbjct: 516 LYDFIAEAADELTVKANMRVVIVNDTA---SSDWWKCSVDGKEGVVPSNFIK 564
Score = 30.7 bits (66), Expect = 0.68
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 467 QNPDELSIIENEQLEVVGEGDGDGWLKARNYRG-----EEGYVPHNYL 509
+N E+SI+E+E + ++ +G+ D +L RN E G VP NY+
Sbjct: 29 ENEREISIVEDEIVCLLEKGEDDWYLVKRNVNSNDDDEEIGIVPSNYI 76
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 593 ALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEECDEETL 652
ALYDY ++ DE++ + Q + D D W N G P VE D +
Sbjct: 87 ALYDYTQQSVDEISFQADQTLDCYG----DTDSDWILVGFNNNFGLAPRNYVEGMDASSA 142
Query: 653 P 653
P
Sbjct: 143 P 143
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 44.0 bits (99), Expect = 7e-05
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 588 LGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWR----GETNGIVGNFPSLI 643
LGY ALYDY+A +E++ +G I V+ +DGWW GE + G FPS
Sbjct: 609 LGYVSALYDYDAAIPEEISFRKGDTIAVLKL----YEDGWWEGFVVGEDDHNRGQFPSNF 664
Query: 644 VEECD 648
V E +
Sbjct: 665 VREIE 669
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 41.1 bits (92), Expect = 5e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 593 ALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEECDEETL 652
A+YD+ +L G++I V+ V++ WWRGE NG G FPS V ++ +
Sbjct: 147 AMYDFPGPDAGDLGFHAGEVIIVLEH----VNNDWWRGELNGKEGIFPSNYVRLLEDSAV 202
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYLDVDHDQASSA 519
A+Y + + +L E + V+ + D W N G+EG P NY+ + D A A
Sbjct: 147 AMYDFPGPDAGDLGFHAGEVIIVLEHVNNDWWRGELN--GKEGIFPSNYVRLLEDSAVKA 204
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 586 PTLGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRG----ETNGIVGNFPS 641
P Y ALY Y+A E++L + V++R DGWW+G T G +G FPS
Sbjct: 352 PIFAYVRALYAYKATLPSEIDLNVDDTLVVLNRQK----DGWWKGLVVSPTVGRIGLFPS 407
Query: 642 LIVEECD 648
+EE +
Sbjct: 408 NYIEELE 414
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYR---GEEGYVPHNYLD 510
ALY+Y A P E+ + ++ L V+ DGW K G G P NY++
Sbjct: 359 ALYAYKATLPSEIDLNVDDTLVVLNR-QKDGWWKGLVVSPTVGRIGLFPSNYIE 411
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 40.7 bits (91), Expect = 6e-04
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNYL 509
ALY + ++P+E++I ++E +E+V + WL +N G EG+VP Y+
Sbjct: 1113 ALYDFAGRSPNEMTIKKDEIIEIVQKEPSGWWLALKN--GAEGWVPATYV 1160
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 580 PPKVDLPTLGYCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNF 639
PP ++ ALYD+ + +E+ +++ +II +V + GWW NG G
Sbjct: 1100 PPPAEVEKKDLYLALYDFAGRSPNEMTIKKDEIIEIVQKE----PSGWWLALKNGAEGWV 1155
Query: 640 PSLIVEE 646
P+ V E
Sbjct: 1156 PATYVTE 1162
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 593 ALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEECDEETL 652
ALYD+ A EL+ ++G II V+ D WW+G VG FP V+ E T+
Sbjct: 222 ALYDFAATEQGELSFKKGDIILVLESVYKD----WWKGSCKNAVGIFPVNYVQRVVEPTI 277
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 590 YCFALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGE-TNGIVGNFPSLIVEECD 648
+ AL+ + ++ DEL L EG+ ++ + + DGWW GE G G FP+ VE
Sbjct: 6 FVIALHSFPGKSSDELPLVEGRKYLLIKMD-EEFGDGWWEGEDEQGNRGIFPASHVELIS 64
Query: 649 EE 650
+E
Sbjct: 65 DE 66
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 36.7 bits (81), Expect = 0.010
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 595 YDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNF 639
Y +E E +EL L++G ++ V+ ++D+GWW GE G G F
Sbjct: 430 YSFEPETENELKLKKGDLLLVLK----EIDEGWWVGEKLGEDGVF 470
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 35.1 bits (77), Expect = 0.031
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEGYVPHNY---LDVDHDQA 516
ALY++ + +L E + +E + GDG W+ +G P N+ LD+ +
Sbjct: 13 ALYAWPGEREGDLKFTEGDLIECLSIGDGKWWIGRHINTNTQGIFPSNFVHCLDIPTVRP 72
Query: 517 SSAPGLVSQISF-------SSVDYTVEGEDADVVQSPDQISVISAPVGKP 559
S+ S SF SS+D + D + +PD + +A + KP
Sbjct: 73 GSSMSRTSASSFRYSSPQKSSIDTPITSSDQGL--TPDLVGSSNA-LNKP 119
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 34.7 bits (76), Expect = 0.041
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 593 ALYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRG-----ETNGIVGNFPSLIVEEC 647
ALY Y + D+L + GQ+I VVS ++D W+ G + N +G+FP E
Sbjct: 10 ALYPYRSSFSDDLEFDPGQVIDVVS----NLDGDWYTGTYVDSDGNRKIGSFPKDFTEPA 65
Query: 648 DE 649
++
Sbjct: 66 ED 67
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 34.7 bits (76), Expect = 0.041
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARN-YRGEEGYVPHNYLD 510
ALY YTA+ E+S + + V+G + W + N G G+VP ++ +
Sbjct: 31 ALYDYTARKATEVSFAKGDFFHVIGRENDKAWYEVCNPAAGTRGFVPVSHFE 82
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 595 YDYEAEACDELNLEEGQIIRVVSRNAHD 622
+D+ AE DEL + G+ I +++R+ H+
Sbjct: 132 FDFAAERPDELEAKAGEAIIIIARSNHE 159
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 29.9 bits (64), Expect = 1.2
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 228 NDPIDTITMEHESVAVTLAQEARRWATRVVREASLVRDANRKISSYQAMRESGHKVDPNE 287
+D DT + ++ A EA V E +D N K S ++ + E K+ +
Sbjct: 391 SDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHKDVEEKDTKITNED 450
Query: 288 PNGPELEVK---MDELRATIRRSEISKAKYEARLECLRVGGAPVDDWLKEIDLLAVQETL 344
E +VK D + A + + + E ++E D KE D + V +
Sbjct: 451 TGKTETDVKAKETDSIEANDKDEKTDSKETEDKVE--ETESKEADVKAKETDSIEVDDKE 508
Query: 345 PRSSSLLSV----RTDASGAADQPSSD 367
++ S + +TD+ ++P+ D
Sbjct: 509 EKTDSKETADKVEQTDSKDTNEKPAKD 535
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 259 EASLVRDANRKISSYQAMRES-GHKVDPNEPNGPELEVKMD 298
+ L+R++ KI + M E G K+DPN+P E K D
Sbjct: 939 DEDLLRNSKTKIETLVKMGERIGQKIDPNKPTDAEDHSKSD 979
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 3.6
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 291 PELEVKMDELRATIRRSEISKAKYEARLECLRVGGAPVDDWLKEIDLLAVQETLPRSSSL 350
P +V + LR I + + + +E RV PV + ++ E L +SS+
Sbjct: 242 PARDVSSELLRRRIESARLRSNQLNEPVEQPRVVQTPVTNASEQQAWNDFDEILHANSSV 301
Query: 351 LSVRTDASGAADQPSSDSF 369
SV T+A+ + +PSS F
Sbjct: 302 HSVATEATISNPRPSSGRF 320
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 26 FQQHITDEAKLLRHQKLSSARKFTEGLAQAHKELQMTVGEVDKTKKL 72
FQ++ +E + ++ S KF E LA++ +++ T VD KK+
Sbjct: 181 FQKNCPEEMEFVKWWGQPSFGKFVENLARSIQDVPFTSATVDIAKKI 227
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 184 ATQHSFGKIRDQAQQLTREYNLQCLYLYYPVLKQHIQYEFEPCDNDPIDTITMEHESVAV 243
A F K + QQ E +Q + L L+QHI + P + + T ++AV
Sbjct: 462 ALNPEFFKNANGEQQAPNEQAVQAISL----LQQHINKQLGPAAANNPEQATAIANALAV 517
Query: 244 TLAQEARRWATRVVREASLVRDANRK 269
LAQ+ ++ T++ + + A R+
Sbjct: 518 ALAQKLQKQQTQMQGPQQVQQQAKRR 543
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.9 bits (59), Expect = 4.8
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 292 ELEVKMDELRATIRRSEISKAKYEARLECLRVGGAPV-DDWLK-----EIDLLAVQETLP 345
+L+++++ L A R+ +YE + E L + ++ LK + ++ +Q+T
Sbjct: 157 QLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNECLKHDPQLDAEIRTLQDTFE 216
Query: 346 RSSSLLSVRTDASGAADQPSSDSFYDSDN 374
L+ + + AD+P DS ++S++
Sbjct: 217 EVERTLTKQVSDAKIADKPLKDSMFNSNS 245
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.9 bits (59), Expect = 4.8
Identities = 46/218 (21%), Positives = 91/218 (41%), Gaps = 15/218 (6%)
Query: 114 KVSSRRDQLEEKSTGARNDYILSIAAANAHQNRYFLVDLQTCMQNMESSVYEKVSEYLTL 173
+++ R D L +S + + + Q L L+ +QN E + EKV+E+ +L
Sbjct: 605 EITRRTDPLPSRSIYFSENVEMDLVKRKEEQLNAQLSQLEN-LQNEERKLQEKVNEHESL 663
Query: 174 MGRTELLTCSATQHSFGKI--RDQAQQLTREYNLQCLYLYYPVLKQHIQYEFEPCDNDPI 231
+ RT + + + K+ + QQL Q L L K Q+ E N+ I
Sbjct: 664 LSRTNDILSTLRKERDEKLIPIHEWQQLQERIEHQTLLLRQRE-KVPEQFAAEIEKNEDI 722
Query: 232 DTITMEHESVAVTLAQEARRWATRVVREASLVRDANRKISSYQAMRESGHKVDPNEPNGP 291
E +V +E AT + + + S + E+ +K++ +E +
Sbjct: 723 RKENFEALMNSVLKVKENSIKAT---------NNFEKMLGSRLNVIEAKYKLEKHEMDAN 773
Query: 292 ELEVKMDELRATIRRSEISKAKYEARLECLRVGGAPVD 329
++ ++ E++ R +I+ AR + + + G+ VD
Sbjct: 774 QVNARLTEVQD--RLKDITDKLASAREDAMSLYGSVVD 809
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 105 ITSLQKNSAKVSSRRDQLE-EKSTGARNDYILSIAAANAHQNRYFLVDL 152
I S+ + A VS L+ KST D LSIA+A++H+N + +D+
Sbjct: 271 IRSVSEYPANVSPPAQSLQLPKSTSNPADLHLSIASASSHKNIFSGLDV 319
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 256 VVREASLVRDANRKISSYQAMRESGHKVDPNEPNGPELEVKMDELRAT 303
V+++A L + ++ + ++P +P GP L++K+ LR+T
Sbjct: 1123 VIKKAPLKQITSKTKEKSTSPTPPSITINPIKPKGPTLKIKLTNLRST 1170
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 103 QSITSLQKNSAKVSSRRDQLEEKSTGARNDYILSIAAANAHQNRYFLVDLQTCMQNMESS 162
QS + + + +R DQ+ K G R S + N Q R ++D+ +N +
Sbjct: 688 QSFSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLN--QARQTILDIIGSKRNEKIL 745
Query: 163 VYEKVSEYLTLM 174
VY + S+YL L+
Sbjct: 746 VYSQFSQYLCLV 757
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 23 VEVFQQHITDEAKLLRHQKLSSARKFTEGLAQAHKEL 59
V +Q ITD+ KL+ HQ++S+ + L Q+ K++
Sbjct: 7 VSCLEQLITDDLKLVEHQEVSNGATWASAL-QSTKDV 42
>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 27.1 bits (57), Expect = 8.3
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 493 KARNYRGEEGY----VPHNYLDVDHDQASSAPGLVSQISFSSVDYTVEGEDADVVQS 545
K Y +EGY + ++ L+VDH + S + DY+ ED VV++
Sbjct: 145 KFPQYNPQEGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPEDFSVVRA 201
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 133 YILSIAAANAHQNRYFLVDLQTCMQNMESSVYEKVSEYL 171
YI S A N N + QT N++S+VY++ E+L
Sbjct: 12 YISSAPAGNLVLNCTATTNKQTLEANLKSAVYQRYPEFL 50
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,812
Number of Sequences: 5004
Number of extensions: 98571
Number of successful extensions: 275
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 48
length of query: 662
length of database: 2,362,478
effective HSP length: 77
effective length of query: 585
effective length of database: 1,977,170
effective search space: 1156644450
effective search space used: 1156644450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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