Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001996-TA|BGIBMGA001996-PA|IPR001452|Src homology-3,
IPR011511|Variant SH3
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 35 0.24
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 34 0.42
03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,874... 33 0.55
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 32 1.3
03_02_0001 + 4844009-4844046,4845155-4845410,4845560-4845704,484... 32 1.3
05_05_0149 - 22733703-22736216 32 1.7
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 32 1.7
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 31 2.2
03_06_0364 + 33392181-33392487,33392919-33392994,33393671-333937... 30 5.1
02_04_0556 - 23848751-23849158,23850615-23850797,23853644-238539... 30 6.8
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 30 6.8
05_07_0021 - 27100249-27101838,27102434-27102547 29 8.9
02_04_0321 + 22020126-22020431,22020520-22021626 29 8.9
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 34.7 bits (76), Expect = 0.24
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 593 ALYDYEAEACDELNLEEGQ--IIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEECD 648
A+ Y AE+ ELNL G ++R VS N GW GE G G FP +E+ D
Sbjct: 333 AIQSYRAESETELNLAAGDYIVVRKVSNN------GWAEGECRGKAGWFPYDYIEKRD 384
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 33.9 bits (74), Expect = 0.42
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 594 LYDYEAEACDELNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIVEECDE 649
++ ++A+A EL++ G + VV + A +GW GE G G FPS VE+ D+
Sbjct: 329 IHPFDAQADGELSISVGDYV-VVRQVA---PNGWSEGECKGKAGWFPSAYVEQRDK 380
>03_02_0473 + 8745721-8745994,8746083-8746090,8746232-8746324,
8746665-8746893,8747314-8747420,8747560-8747622,
8747883-8747983,8748996-8749090,8749330-8749350,
8749987-8750082,8750188-8750308,8750415-8750570,
8750679-8750869,8751207-8751478,8751853-8751954,
8752006-8752038,8752132-8752308,8752397-8752466,
8752512-8752585,8752667-8752908,8752983-8753129,
8753526-8753751,8753893-8753970,8754378-8754521,
8754829-8755008,8755335-8755394,8755484-8755523,
8758653-8759137
Length = 1294
Score = 33.5 bits (73), Expect = 0.55
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 460 ALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYR-GEEG 502
ALY +TA DELS+ E +E+ E + DGW + R G +G
Sbjct: 1089 ALYDFTAGGDDELSLTAGEDVEI--EYEVDGWYYVKKKRPGRDG 1130
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 32.3 bits (70), Expect = 1.3
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 9 LEENEKLARARLAAVEVFQQHITDEAKLLRHQKLSSARKFTEGLAQAHKELQMTVGEV-D 67
L + + AR +L A+E + I E+ LR + LSS TE LA A ++++ +G+V D
Sbjct: 607 LTRSARSAREKLEAIEERSEKIMRESDHLR-RSLSSIMSQTEHLATASEDVRARIGDVLD 665
Query: 68 KTKKLY 73
++ ++
Sbjct: 666 RSAAIF 671
>03_02_0001 +
4844009-4844046,4845155-4845410,4845560-4845704,
4845747-4845931,4847011-4847268,4847395-4847476,
4847562-4847641
Length = 347
Score = 32.3 bits (70), Expect = 1.3
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 461 LYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYRGEEG---YVPHNYLDVDHDQAS 517
LY Y P ++ ++N + GD + RG E Y+ YL+ D
Sbjct: 30 LYDYEYAEPPRVTSLQNAVPQRTFSDFGDDVYFVADKRGYESVVHYLAGQYLNTDDSGNV 89
Query: 518 SAPGL-----VSQISFSSVDYTVEGEDADVVQS 545
+ P L V +IS+SS TV+ ED V Q+
Sbjct: 90 ADPRLQLNKVVREISYSSSGVTVKTEDGSVYQA 122
>05_05_0149 - 22733703-22736216
Length = 837
Score = 31.9 bits (69), Expect = 1.7
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 132 DYILSIAAANAHQNRYF--LVDLQTCMQNMESSVYEKVSEYLTLMGRTELL--TCSATQH 187
D L+ + NA NR + DL C+Q +E V++ L+ R + + A QH
Sbjct: 326 DLELATTSQNAQINRMKTEIDDLHKCLQALEEEKSALVADSSKLVDRLKQVEEVLQAVQH 385
Query: 188 SFGKIRDQAQQLTREYNLQCLYLYYPVLKQH 218
I++ Q + +E N C L V K H
Sbjct: 386 LGNSIQNGTQNIHKEMNAACSELAEFVEKLH 416
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 31.9 bits (69), Expect = 1.7
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 593 ALYDYEAEACDELNLEEGQII--RVVSRNAHDVDDGWWRGETNGIVGNFP 640
AL ++AE+ ELNL G I+ R +S N GW GE G G FP
Sbjct: 315 ALDSFKAESESELNLSAGDIVIVRKISTN------GWAEGECKGKAGWFP 358
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 31.5 bits (68), Expect = 2.2
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 130 RNDYILSIAAANAHQNRYFLVDLQTCMQNMESSVYEKVSEYLTLMGR 176
R D+ LS A Q Y L DL + +SS YE + EYL GR
Sbjct: 915 REDWDLSKLIAKLQQYCYLLDDLTPELLEGKSSSYEDLQEYLRTRGR 961
>03_06_0364 +
33392181-33392487,33392919-33392994,33393671-33393740,
33394291-33394320,33394724-33394867,33394954-33395058,
33395496-33395642,33396994-33397069,33397726-33397814,
33398178-33398269,33398351-33398390,33398475-33398531
Length = 410
Score = 30.3 bits (65), Expect = 5.1
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 207 CLYLYYPVLKQHIQYEFEPCDND-PIDTITMEHESVAVT--LAQEARRWATRVVREASLV 263
CL Y LK H + F I T + + +V V + + R RV+ E + +
Sbjct: 273 CLQ-YMSALKDHAIFRFCAIPQIMAIGTCAICYNNVNVFRGVVKMRRGLTARVIDETNTM 331
Query: 264 RDANRKISSYQAMRESGHKVDPNEPNGPELEVKMDELRATIRRS--------EISKAKYE 315
D + ++ ES K+D N+PN ++D ++ T + S ++ K+KY
Sbjct: 332 SDVYTAFYEFSSLIES--KIDNNDPNASLTRKRVDAIKRTCKSSCSLKRRGYDLEKSKYN 389
Query: 316 ARL 318
+ L
Sbjct: 390 SML 392
>02_04_0556 -
23848751-23849158,23850615-23850797,23853644-23853908,
23854019-23854059
Length = 298
Score = 29.9 bits (64), Expect = 6.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 603 DELNLEEGQIIRVVSRNAHDVDDGWWRGETNG 634
DE +L EG+I R+ SR +V DG W G
Sbjct: 176 DEASLTEGKIERMASRFLAEVKDGTWSAPGRG 207
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 29.9 bits (64), Expect = 6.8
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 483 VGEGDGDGWLKARNYRGEEGYVPHNYLDVDHDQASSAPGLVSQISFSSVDYTVEGEDADV 542
V EG GD WL+ +N G+V + D A+ P ++ + + + ++
Sbjct: 6 VAEGGGDPWLRTKN-----GHVGRQVW--EFDPAAGDPDELAAVEAARRGFAARRH--EL 56
Query: 543 VQSPDQISVISAPVGKPDEPTKXXXX----XXXXXXXXXXXPPKVDLPTLGYCFALYDYE 598
S D + + PVGK + + P K+D+P + L ++E
Sbjct: 57 KHSSDLLMRMQWPVGKSNWVSMFLASYEDCRMQRTQFAKANPLKLDIPAI----KLEEHE 112
Query: 599 AEACDE-LNLEEGQIIRVVSRNAHDVDDGWWRGETNGIVGNFPSLIV 644
A + L+ + I R + AH DG W G+ G + P LI+
Sbjct: 113 AVTGEAVLSSLKRAIARYSTFQAH---DGHWPGDYGGPMFLMPGLII 156
>05_07_0021 - 27100249-27101838,27102434-27102547
Length = 567
Score = 29.5 bits (63), Expect = 8.9
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 275 AMRESGHKVDPNEPNGPELEVKMDELRATIRRSEISKAKYEARLECLRVGGAPVDDWLK- 333
AM GH+V+ EP+ E ++ R + + ++ A +E R A V D ++
Sbjct: 244 AMASRGHEVEHEEPSLQAAEAELSSARIELESIKAEGLRFTASIERTRRETARVTDEIRR 303
Query: 334 --EIDLLAVQETLPRSSSLLSVRT--DASGAADQPSSDS 368
E + A ++ LL R+ +A AAD+ + ++
Sbjct: 304 LTEQEKAASAHVQQLNAKLLKARSRLEAVTAADERADET 342
>02_04_0321 + 22020126-22020431,22020520-22021626
Length = 470
Score = 29.5 bits (63), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 285 PNEPNGPELEVKMDELRATIRRSEISKAKYEARLE 319
P+ PN L K+DE RA++RR + A +A L+
Sbjct: 172 PDTPNSLVLRGKLDEARASLRRIRGAAANIDAELK 206
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.130 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,820,532
Number of Sequences: 37544
Number of extensions: 637387
Number of successful extensions: 1230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1223
Number of HSP's gapped (non-prelim): 15
length of query: 662
length of database: 14,793,348
effective HSP length: 87
effective length of query: 575
effective length of database: 11,527,020
effective search space: 6628036500
effective search space used: 6628036500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 63 (29.5 bits)
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