GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001996-TA|BGIBMGA001996-PA|IPR001452|Src homology-3,
IPR011511|Variant SH3
         (662 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    28   0.69 

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 44/210 (20%), Positives = 87/210 (41%), Gaps = 19/210 (9%)

Query: 156 MQNMESSVYEKVSEYLTLMGRTELLTCSATQHSFGKIRDQAQQLTREYNLQCLYLYYPVL 215
           +  +++ + EK +E   +    E+     T H FG++++Q   L  E N          L
Sbjct: 679 INRIQAMLQEKEAELRDISA--EVSKIEKTAHRFGQLKEQHDMLNYELN---------NL 727

Query: 216 KQHIQYEFEPCDNDPIDTITMEHESVAVTLAQEARRWATRVVREASLVRDANRKISSYQA 275
           KQ +         + I+ +  + E++  T+  EAR   T+    ++ V+D   KI+  + 
Sbjct: 728 KQRLAQTSFQQTKEEIEELNKKIETLQKTIV-EARETQTQC---SAKVKDLQAKIADGKG 783

Query: 276 MRESGHKVDPNEPNGPELEVKMDELRATIRRSEISKAKYEARLECLRVGGAPVDDWLKEI 335
            RE   ++   E +    + K +E R   ++ E      +  +E L+ G     +   ++
Sbjct: 784 HRE--RELKSAEEDLKRSKKKSEESRKNWKKHEQDFETLKLEIEELQKGIVTAKEQAVKL 841

Query: 336 D--LLAVQETLPRSSSLLSVRTDASGAADQ 363
           +  + A+Q+ L   S      T A  A  Q
Sbjct: 842 EEQIAALQQRLVEVSGTTDEMTAAVTALKQ 871


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,417
Number of Sequences: 2123
Number of extensions: 21343
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 1
length of query: 662
length of database: 516,269
effective HSP length: 68
effective length of query: 594
effective length of database: 371,905
effective search space: 220911570
effective search space used: 220911570
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)