GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001996-TA|BGIBMGA001996-PA|IPR001452|Src homology-3,
IPR011511|Variant SH3
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    37   0.049
At1g12150.1 68414.m01407 expressed protein contains Pfam profile...    33   0.80 
At1g06340.1 68414.m00670 agenet domain-containing protein contai...    33   0.80 
At4g27595.1 68417.m03964 protein transport protein-related low s...    31   2.4  
At2g39140.1 68415.m04809 pseudouridine synthase family protein         30   4.3  
At2g25625.1 68415.m03070 expressed protein                             29   9.8  

>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
            profile PF00018: SH3 domain
          Length = 1196

 Score = 36.7 bits (81), Expect = 0.049
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)

Query: 459  TALYSYTAQNPDELSIIENEQLEVVGEGDGDGWLKARNYR-GEEG 502
            TALY +TA   DEL++   E+LE+  E + DGW   +  R G +G
Sbjct: 1140 TALYDFTAGGDDELNLTAEEELEI--EYEVDGWFYVKKKRPGRDG 1182


>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827);
           expression supported by MPSS
          Length = 548

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 34/143 (23%), Positives = 68/143 (47%), Gaps = 12/143 (8%)

Query: 228 NDPIDTITMEHESVAVTLAQEARRWATRVVREASLVRDANRKISSYQAM--RESGHKVDP 285
           N  I+++  E E+ A+  A+EA +    V+RE    + A  K+     M  ++   K   
Sbjct: 389 NRKIESLKKETEA-AMIAAEEAEKRLELVIREVEEAKSAEEKVREEMKMISQKQESKKQD 447

Query: 286 NEPNGPELEVKMDELRATIRRSEISKAKYE-------ARLECLRVGGAPVDDWLKEIDLL 338
            E +G ++++ + E  +  R +  ++A  E       A LE +    A  D+ L E +L 
Sbjct: 448 EESSGSKIKITIQEFESLKRGAGETEAAIEKKLATIAAELEEINKRRAEADNKL-EANLK 506

Query: 339 AVQETLPRSSSLLSVRTDASGAA 361
           A++E + +++ L     +++ AA
Sbjct: 507 AIEE-MKQATELAQKSAESAEAA 528


>At1g06340.1 68414.m00670 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 134

 Score = 32.7 bits (71), Expect = 0.80
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 598 EAEACDELNLEEGQIIRVVSRNAHDVD----DGWWRGETNGIVGNFPSLIVEECDEE-TL 652
           E  + DEL     + + V+ R    VD    DGWW GE   +  N  S+     DEE   
Sbjct: 56  EVISADELRPMPPKSLHVLIRCGDKVDAFDKDGWWVGEVTAVRRNIYSVYFSTTDEELEY 115

Query: 653 PLHS 656
           PL+S
Sbjct: 116 PLYS 119


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 6   RTVLEENEKLARARLAAVEVFQQ-HITDEAKLLRHQKLSSARKFTEGLAQAHKELQMTVG 64
           +TV++ENE+L     A  +  ++    DE    R  KL S+ +  E L +        + 
Sbjct: 778 QTVVQENEELREKESAYQKKIEELSKVDEIFADREAKLQSSTQENEELREREVAYLKKIE 837

Query: 65  EVDKTKKLYFDEEHTAHDV 83
           E+ K ++   D+E+  HD+
Sbjct: 838 ELAKLQENLLDKENELHDM 856


>At2g39140.1 68415.m04809 pseudouridine synthase family protein 
          Length = 410

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 226 CDNDPIDTITMEHESVAVTLAQEARRWATRVVREASLVRDANRKISSYQAMRESGHKVDP 285
           C  D ++ +  +H+     L           VRE  LV++A  ++ S + +R  G ++  
Sbjct: 331 CVPDSVELMPKQHDIPRARLRIVVHEGRNHEVRE--LVKNAGLEVHSLKRVRIGGFRLPS 388

Query: 286 NEPNGPELEVKMDELRA 302
           +   G  +E+K  EL+A
Sbjct: 389 DLGLGKHVELKQSELKA 405


>At2g25625.1 68415.m03070 expressed protein
          Length = 152

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 103 QSITSLQKNSAKVSSRRDQLEEKSTGARNDYILSIAA 139
           QS+ SL K ++K+S RR + E +    +  ++L +AA
Sbjct: 20  QSLASLLKTTSKISCRRTENETEPRKNKCSFVLGVAA 56


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,575,930
Number of Sequences: 28952
Number of extensions: 512231
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 7
length of query: 662
length of database: 12,070,560
effective HSP length: 86
effective length of query: 576
effective length of database: 9,580,688
effective search space: 5518476288
effective search space used: 5518476288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 62 (29.1 bits)