Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001995-TA|BGIBMGA001995-PA|IPR001060|Cdc15/Fes/CIP4
(53 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 27 0.30
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 1.6
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch... 25 1.6
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 24 2.8
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 24 2.8
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 23 3.7
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 23 4.9
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 23 4.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 6.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 22 8.5
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha... 22 8.5
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 0.30
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 3 SMSNYTKFLKNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRSSIERSYSE 52
S+ Y KF LH + + + + LED++ Y +RSSIE+ Y++
Sbjct: 2 SLETY-KFSDELH-DDFKVVDSWINNGAKWLEDIQLYYKERSSIEKEYAQ 49
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 24.6 bits (51), Expect = 1.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 9 KFLKNLHTEQIAKLHAKNQHECDLLE 34
+F NL+ QI KL + Q++C LE
Sbjct: 236 EFYNNLNQFQIKKLSLERQYDCANLE 261
>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 125
Score = 24.6 bits (51), Expect = 1.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 21 KLHAKNQHECDLLEDLRC--YIVKRSSIERSYSEI 53
KL AKN + C L++ +C IV +S+ ++EI
Sbjct: 63 KLFAKNSYRCS-LKETKCIDVIVSHNSLAPQFTEI 96
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 23.8 bits (49), Expect = 2.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 12 KNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRSSIERSYSE 52
++L +++++ H K+Q L+ED + + R I RS S+
Sbjct: 120 QDLELDKVSQDHEKDQSNTYLMEDGYEFPLTRDLIRRSKSD 160
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 23.8 bits (49), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 22 LHAKNQHECDLLEDLRCYIVKRSSIERSYS 51
L ++ + +LE + + KR+SIER Y+
Sbjct: 37 LMSRTKSSLSVLESIDEFYAKRASIEREYA 66
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 23.4 bits (48), Expect = 3.7
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 18 QIAKLHAKNQHECDLLEDLRCYIVKRSSIERSYSEI 53
QI KL+ ++ + L+DLR I++ + E + +++
Sbjct: 90 QINKLYQRSCDNANYLQDLRSLILQTPTAEANATQV 125
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 23.0 bits (47), Expect = 4.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 19 IAKLHAKNQHECDLLEDL 36
+ L A H+CD++EDL
Sbjct: 340 VPPLRADILHQCDIMEDL 357
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 23.0 bits (47), Expect = 4.9
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 11 LKNLHTEQIAKLHAKNQHECDLLEDLRCYI 40
L N ++ H+ + +C LL ++RC+I
Sbjct: 477 LANASSDLCYVCHSALEEDCVLLGEIRCHI 506
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 22.6 bits (46), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 12 KNLHTEQIAKLHAKNQHECDLLEDLRCYI 40
+++ TE+ KL KN CD++E L+ I
Sbjct: 1151 QSIATEE--KLRRKNSELCDIIEALKYQI 1177
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 22.2 bits (45), Expect = 8.5
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 7 YTKFLKNLHTEQIAKLHAKN 26
+ KF++ H + I KLH ++
Sbjct: 563 FEKFVRQQHLQNIGKLHREH 582
>SPBC409.20c |psh3||ER chaperone SHR3 homologue
Psh3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 22.2 bits (45), Expect = 8.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 4 MSNYTKFLKNLHTEQIAKLH 23
+ NY +F +N+H +A H
Sbjct: 128 LQNYVQFPRNMHLSVLAASH 147
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.130 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,410
Number of Sequences: 5004
Number of extensions: 6452
Number of successful extensions: 22
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 11
length of query: 53
length of database: 2,362,478
effective HSP length: 34
effective length of query: 19
effective length of database: 2,192,342
effective search space: 41654498
effective search space used: 41654498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)
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