GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001995-TA|BGIBMGA001995-PA|IPR001060|Cdc15/Fes/CIP4
         (53 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818...    25   7.5  
01_07_0204 + 41974475-41976766                                         25   7.5  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    25   7.5  
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459...    25   9.9  
05_03_0066 + 7980038-7981468                                           25   9.9  

>03_02_0406 +
           8182870-8184262,8184376-8184452,8184809-8184920,
           8185064-8185071,8185633-8186217
          Length = 724

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 8   TKFLK--NLHTEQIAKLHAKNQHECDLLED 35
           TKF+K  N       K HA   H+CDL+E+
Sbjct: 151 TKFIKIHNHGPVPPRKPHAGEHHDCDLMEN 180


>01_07_0204 + 41974475-41976766
          Length = 763

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 6   NYTKFLKNLHTEQIAKLHAK 25
           NY KF++  H+ + A LHA+
Sbjct: 234 NYAKFMEEYHSSKEAGLHAE 253


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 19  IAKLHAKNQHECDLLEDLRCYIVKR 43
           I +L AKNQHE  L+ +  C  + R
Sbjct: 620 IVELLAKNQHERQLMTETDCSDINR 644


>12_02_0661 +
           21644328-21644517,21644697-21644875,21644899-21645922,
           21647108-21647262
          Length = 515

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 30  CDLLEDLRCYIVKRSSIERSYSE 52
           CD L DLR  +V   + E SY++
Sbjct: 442 CDKLADLRLKLVNNHAFEPSYAQ 464


>05_03_0066 + 7980038-7981468
          Length = 476

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 11  LKNLHTEQIAKLHAK--NQHECDLLEDLR 37
           LKNLH+++    H K  +Q +C++ ++ R
Sbjct: 210 LKNLHSQEAEAAHGKITDQSDCEIKKEPR 238


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,159
Number of Sequences: 37544
Number of extensions: 31407
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 14,793,348
effective HSP length: 34
effective length of query: 19
effective length of database: 13,516,852
effective search space: 256820188
effective search space used: 256820188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)