GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001995-TA|BGIBMGA001995-PA|IPR001060|Cdc15/Fes/CIP4
         (53 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.064
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   0.60 

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.1 bits (57), Expect = 0.064
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 1   MPSMSNYTKFLKN-LHTEQIAKLHAKNQHECDLLED 35
           + +M++  + L+N LH E +++L  ++QHE D L D
Sbjct: 767 LEAMTSTKEGLENELHQELMSQLSVQDQHEVDSLND 802


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 4   MSNYTKFLKNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRS-SIERSYSE 52
           ++N+  F K+    Q   LHA +  E + +    CY + R+  ++R Y +
Sbjct: 274 LANHFFFKKDYQKVQHLALHAFHNTENEAMRAESCYQLARAFHVQRDYDQ 323


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,167
Number of Sequences: 2123
Number of extensions: 1366
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 53
length of database: 516,269
effective HSP length: 33
effective length of query: 20
effective length of database: 446,210
effective search space:  8924200
effective search space used:  8924200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)