GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001995-TA|BGIBMGA001995-PA|IPR001060|Cdc15/Fes/CIP4
         (53 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z83109-8|CAB05521.2|  311|Caenorhabditis elegans Hypothetical pr...    27   2.1  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   2.1  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81096-8|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    25   6.4  

>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/19 (52%), Positives = 15/19 (78%)

Query: 2    PSMSNYTKFLKNLHTEQIA 20
            P++  +TKF+KNL TE+ A
Sbjct: 6607 PTLQEFTKFVKNLTTEKFA 6625


>Z83109-8|CAB05521.2|  311|Caenorhabditis elegans Hypothetical
           protein F44G3.9 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 1   MPSMSNYTKFLKNLHTEQIAKLHAKNQHECD 31
           +PS   Y+K L   H++++   H   QHE D
Sbjct: 129 LPSFREYSKGLLPTHSDRLRFQHEHAQHEID 159


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 2   PSMSNYTKFLKNLHTEQIAKLHAKNQHECDLLE 34
           P+++   + + N + EQ+AKL  K Q  C+ LE
Sbjct: 104 PALAGPYETMYNKYKEQVAKLGPKGQEYCNGLE 136


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
           protein W02B8.2 protein.
          Length = 1256

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 3   SMSNYTKFLKNLHTEQIAKLHAKNQHECDLLE---DLRCYIVKRSSIERSYSE 52
           +M +  +  K LH E +     K    CDLLE   +L+ +  KR  +E+   E
Sbjct: 310 AMGDSEQATKYLHAENMKLTRQKADIRCDLLEARRNLKGFDEKREELEKQRDE 362


>Z81096-8|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 16  TEQIAKLHAKNQHECDLLED--LRCYIVKRSSI 46
           T+Q+++  +KN +EC+++E   L C    RS++
Sbjct: 529 TKQVSEQTSKNYYECEMIEKEWLDCLKKYRSAV 561


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
           protein B0365.7 protein.
          Length = 2769

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 16  TEQIAKLHAKNQHECDLLED--LRCYIVKRSSI 46
           T+Q+++  +KN +EC+++E   L C    RS++
Sbjct: 529 TKQVSEQTSKNYYECEMIEKEWLDCLKKYRSAV 561


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,247
Number of Sequences: 27539
Number of extensions: 32700
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 6
length of query: 53
length of database: 12,573,161
effective HSP length: 34
effective length of query: 19
effective length of database: 11,636,835
effective search space: 221099865
effective search space used: 221099865
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)