GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001995-TA|BGIBMGA001995-PA|IPR001060|Cdc15/Fes/CIP4
         (53 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58250.1 68416.m06494 meprin and TRAF homology domain-contain...    29   0.50 
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila...    27   1.5  
At4g00695.1 68417.m00095 hypothetical protein                          27   2.0  
At1g80245.2 68414.m09392 expressed protein                             27   2.0  
At1g80245.1 68414.m09391 expressed protein                             27   2.0  
At1g31380.1 68414.m03841 hypothetical protein                          26   3.5  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    25   4.6  
At3g54320.2 68416.m06004 ovule development protein, putative sim...    25   8.1  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    25   8.1  

>At3g58250.1 68416.m06494 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 317

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MPSMSNYTKFLKNLHTEQIAKLHAKNQH-ECDLLEDLRCYI--VKRSSIERSYSEI 53
           +PS + Y K L  +H +   K   KNQ+ +   +  L C I  V+RS  E S +++
Sbjct: 160 LPSQAKYVKSLFEIHPDIATKFRIKNQYLKTGYMNVLLCLIETVRRSPKEISKNDL 215


>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 894

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 17  EQIAKLHAKNQHECDLL--EDLRCYI 40
           +++ K++ KN  EC LL  E+  CY+
Sbjct: 312 DELVKVYGKNSKECSLLCIEETSCYV 337


>At4g00695.1 68417.m00095 hypothetical protein
          Length = 176

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 4  MSNYTKFLKNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRSSI 46
          M   ++ LKN  T+ +    + ++ E DLL  L+  +++R+ +
Sbjct: 1  MEELSQILKNNRTDDLTWFCSLSESELDLLISLKKLVIRRAKV 43


>At1g80245.2 68414.m09392 expressed protein
          Length = 127

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 4  MSNYTKFLKNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRSSI 46
          M   T+ LKN  T+ +    + ++ E DLL  L+   ++R+ I
Sbjct: 1  MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKI 43


>At1g80245.1 68414.m09391 expressed protein
          Length = 127

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 4  MSNYTKFLKNLHTEQIAKLHAKNQHECDLLEDLRCYIVKRSSI 46
          M   T+ LKN  T+ +    + ++ E DLL  L+   ++R+ I
Sbjct: 1  MEELTQILKNNRTDDLTWFCSLSESELDLLISLKKLAIQRAKI 43


>At1g31380.1 68414.m03841 hypothetical protein
          Length = 175

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 1  MPSMSNYTKFLKNLHTEQIAKLHAKNQH 28
          +PS   + K L   H +  +KLH KN H
Sbjct: 56 LPSQVEFVKSLFEKHPDIESKLHLKNPH 83


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
           Pfam PF04054: CCR4-Not complex component, Not1; contains
           TIGRFAM TIGR01612: reticulocyte binding protein; similar
           to General negative regulator of transcription subunit 1
           (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
           gb|T44328 and gb|AA395265
          Length = 2378

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 9   KFLKNLHTEQIAKLHAKNQHECDLLEDL 36
           KF+KN+H  +     AK  H  D L DL
Sbjct: 581 KFVKNVHFSESDDFRAKIFHPSDPLSDL 608


>At3g54320.2 68416.m06004 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 356

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 27  QHECDLLEDLRCYIVKRSSIERSYSEI 53
           +HEC  LE+L C +V R S   S S +
Sbjct: 306 KHECLNLENLDCCVVGRESPPSSSSPL 332


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 27  QHECDLLEDLRCYIVKRSSIERSYSEI 53
           +HEC  LE+L C +V R S   S S +
Sbjct: 377 KHECLNLENLDCCVVGRESPPSSSSPL 403


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.130    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,096
Number of Sequences: 28952
Number of extensions: 28623
Number of successful extensions: 66
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 9
length of query: 53
length of database: 12,070,560
effective HSP length: 34
effective length of query: 19
effective length of database: 11,086,192
effective search space: 210637648
effective search space used: 210637648
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)