GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001994-TA|BGIBMGA001994-PA|IPR011009|Protein kinase-like
         (1913 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    27   0.94 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   6.6  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 0.94
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 508 DEPVKSEVTIKPLTKMQPT-LSEEKVEPPEPQQMNEASPK 546
           DE +K E+   P  K +PT +S  K  PP P Q+ E   K
Sbjct: 241 DEQLK-ELENPPTPKPRPTKVSRRKPRPPRPTQVEEEEEK 279


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 624 SPIPINDAYTDNDKDWLPKAPSPVALPTP-VEKPG 657
           +P+P +   +      +P AP P  L +P V++PG
Sbjct: 70  TPLPSDGTTSPEPDPEIPVAPEPAPLASPLVQEPG 104


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.126    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 397,470
Number of Sequences: 317
Number of extensions: 16910
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 2
length of query: 1913
length of database: 114,650
effective HSP length: 67
effective length of query: 1846
effective length of database: 93,411
effective search space: 172436706
effective search space used: 172436706
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 50 (24.2 bits)