GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001993-TA|BGIBMGA001993-PA|undefined
         (190 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   2.7  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 16  EPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAE 56
           EP   KR+R +  DP   LR V +      +       P+E
Sbjct: 347 EPGMLKRKRQKYHDPSQLLRHVEESDKQRTHQPFLLNIPSE 387


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 166 LEKVIEELEISMLKLRTSQ 184
           LEK  EEL+I   K+ T +
Sbjct: 171 LEKTSEELKIPKAKINTGK 189


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,980
Number of Sequences: 317
Number of extensions: 1964
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 190
length of database: 114,650
effective HSP length: 53
effective length of query: 137
effective length of database: 97,849
effective search space: 13405313
effective search space used: 13405313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)