Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001993-TA|BGIBMGA001993-PA|undefined
(190 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 31 0.11
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 29 0.44
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 1.8
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 26 3.1
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 25 5.4
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 25 5.4
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 5.4
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 7.1
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 25 7.1
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 7.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.4
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 25 9.4
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 31.1 bits (67), Expect = 0.11
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 89 DWERGVQVPVNPDSLPAPKVKIIENPRSPNFQEFHFTTPARAEAACSYDLDATDIAWLKL 148
D E G ++P L + +E+ S N + A DLDAT W +
Sbjct: 44 DGEEGADTKIDPHLLEEDDLNPVEDYDSKN---------QKVVEASKLDLDATSTVWAES 94
Query: 149 LNSER-ARAGAAPINEDQLEKVIEELE 174
L+ R A + I ++++EK +EE E
Sbjct: 95 LSINREASISQSGIVDNEMEKKVEEEE 121
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 29.1 bits (62), Expect = 0.44
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 68 LPDNEPLTPSEYWIITDTWKQDWERGVQVPVNPDSLPAPKVKIIENPRSPNFQEFHFTTP 127
+PD P E W T+ W++ + DS PAPK+ +++FHFTT
Sbjct: 610 IPDGIPAMSVEVWA-TNGWRRYVHEAFGMHTFGDSGPAPKL----------YEKFHFTTS 658
Query: 128 ARAEAA 133
A+ A
Sbjct: 659 GVAQRA 664
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 139 DATDIAWLKLLNSERARAGAAPINEDQLEKVIEELE 174
D+ + A+ L S+R A + ++ LEKVI ELE
Sbjct: 838 DSLENAYTYLAESKRMLANELQMKQEDLEKVILELE 873
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 149 LNSERARAGAAPINEDQLEKVIEELEIS 176
LNS +R+ AP+ EDQL EEL +S
Sbjct: 181 LNSNASRSPIAPLTEDQL-SAREELPLS 207
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 4 RGTKRATVTRGEEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASE 52
+GTK+ + GE+ S +KR ++E L P +D+ I N + ++
Sbjct: 51 QGTKKLESSVGEQESATKRAKIENLKDNQDLIPNNDVNGIHINNSAVAD 99
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 97 PVNPDSLPAPKVKIIENPRS 116
P PD L AP+VK + PRS
Sbjct: 1006 PTKPDHLVAPRVKPLLPPRS 1025
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 94 VQVPVNPDSLPAPKVKIIENPRSPNFQEFHFTTPARAEAAC-----SYDLDATDIAWLKL 148
+ +P NPDS + +++ N +E+ +A C +Y + I WL
Sbjct: 39 ISIPSNPDSNDDVSLVLVDTQSDSNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPY 98
Query: 149 LNS 151
S
Sbjct: 99 FRS 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 161 INEDQLEKVIEELEISMLKL 180
IN+ +EK++E + S+LKL
Sbjct: 641 INDSNIEKLLESISYSLLKL 660
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 114 PRSPNFQEFHFTTPARAEAACSYDLDATDIAWLKLLNSERARAGAAPINEDQLEK 168
P + E H T ++ + S ++ + D+A + +RA+ P++++Q++K
Sbjct: 113 PETSTGAEEHQETTEESKQSVSNEVSSPDVAKEQEKLIQRAKRFGIPVDDEQIKK 167
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 63 ISAMKLPDNEP-LTPSEYWIITDTWKQDWERGVQVPVNP 100
+SA ++ ++P + S I DT +QD RG+Q+ + P
Sbjct: 384 LSASQITKSKPEIVKSHSLFIHDTAQQDGLRGIQIAMLP 422
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.6 bits (51), Expect = 9.4
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 150 NSERARAGAAPINEDQLEKVIEELEISM 177
N++R P+++D+ E +IE+L S+
Sbjct: 80 NTKRKITKLPPVSQDEFESIIEDLPESL 107
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 38 SDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLTPSEYWIITDTWK 87
+D + S+Y+ A L K+ ++ +K P PS +I ++WK
Sbjct: 242 NDWEYKSVYDEDLGVHRAYLQAKNEVTVIKGPMFFQFKPSHLILIEESWK 291
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,206
Number of Sequences: 5004
Number of extensions: 38988
Number of successful extensions: 114
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 12
length of query: 190
length of database: 2,362,478
effective HSP length: 69
effective length of query: 121
effective length of database: 2,017,202
effective search space: 244081442
effective search space used: 244081442
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)
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