Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001993-TA|BGIBMGA001993-PA|undefined
(190 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 29 1.8
02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824 29 2.4
11_02_0100 - 8298182-8298448,8298607-8298747,8299002-8299237,829... 29 3.1
02_01_0002 - 9542-9762,11085-11196,11328-12575 29 3.1
08_02_0279 - 15249361-15249612,15251270-15251506,15252704-152527... 28 5.5
01_06_1730 + 39494738-39495853 28 5.5
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 27 7.2
06_03_1373 + 29667871-29668782,29668872-29669851,29670156-296703... 27 9.6
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786... 27 9.6
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 29.5 bits (63), Expect = 1.8
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 15 EEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYN-RSASEAPAELFRKDLISAMK-LPDNE 72
++ + + R+ + + L +LR DL +S + R+ S + +L + + A++ L NE
Sbjct: 283 DDLTAATARKDKAFEALNELRKTRDLNNTSFHQYRTISNSVRDLSARGEVEAVQQLCQNE 342
Query: 73 PLTPSEYWIITDTWKQDWERGVQVPVNPDSLPAPKVKIIENP-RSPNFQEFHFTTPARAE 131
W + ++++D+E+ + V +N L + + NP P E PA E
Sbjct: 343 VEKFMAQWCSSKSFREDYEKRILVSLNSRQL--SRDGRMRNPDEKPIVLETQVAPPAEQE 400
Query: 132 AA 133
A
Sbjct: 401 PA 402
>02_01_0420 + 3076493-3076646,3076721-3077704,3078013-3078824
Length = 649
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 31 LWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLTPSEYWIITDTWKQDW 90
L +L +SD+ ++ Y + S +P+ L S + + + W+ ++ + W
Sbjct: 221 LQRLHQISDMDVTFAYGQHVSHSPSRSLPTILASVLGPAGGAVIAAAVTWLYFNSSYRRW 280
Query: 91 ERGV-QVPVNPDSLPAPKVKI 110
++ Q+ + SLP VKI
Sbjct: 281 KKDFDQLAKSMQSLPGVPVKI 301
>11_02_0100 -
8298182-8298448,8298607-8298747,8299002-8299237,
8299251-8299362
Length = 251
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Query: 77 SEYWIITDTWKQDW-ERG 93
++YWI+ ++W +DW ERG
Sbjct: 190 TKYWIVKNSWGEDWGERG 207
>02_01_0002 - 9542-9762,11085-11196,11328-12575
Length = 526
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 136 YDLDATDIAWLKLLN---SERARAGAAPINEDQLEKVIEELE 174
YDLD+ D WL LN S+R A I+ + EK+I E
Sbjct: 323 YDLDSEDEQWLTQLNHSDSDRKSAHLNHISYEDFEKMITTFE 364
>08_02_0279 -
15249361-15249612,15251270-15251506,15252704-15252772,
15252845-15252895,15254009-15254056,15254187-15254267,
15256219-15256257,15256486-15256551,15258113-15258236,
15258576-15258696,15258771-15258900,15259692-15259853
Length = 459
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 128 ARAEAA--CSYDLDATDIAWLKLLNSERARAGAAPINEDQLEKVIEELE 174
ARAE YDLD D WL+ N+ER +N ++LE ++ +LE
Sbjct: 104 ARAEIGEFVEYDLDNEDEDWLEDYNNERKN-----LNPEKLEVLLFKLE 147
>01_06_1730 + 39494738-39495853
Length = 371
Score = 27.9 bits (59), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 77 SEYWIITDTWKQDWERGVQVPVNPDS 102
+EYWI+ ++W W G + + DS
Sbjct: 310 TEYWIVKNSWGTAWGEGGYIRMQRDS 335
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 145 WLK---LLNSERARAGAAPINEDQLEKVIEELEISM 177
WLK ++ AR API D E +E+LEI+M
Sbjct: 162 WLKPDGVMYPSHARMWLAPIRSDLAENKMEDLEIAM 197
>06_03_1373 +
29667871-29668782,29668872-29669851,29670156-29670350,
29670460-29670676
Length = 767
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 115 RSPNFQEFHFTTPARAEAACSYDLDATDIAWLKLLNSERARAGAAP 160
R P E + T + CS D DA D+AW LN+ R AP
Sbjct: 511 RKPTSNECYETRRRQQPPMCSDDDDA-DVAWYIRLNACMHRVPVAP 555
>06_01_1009 -
7859357-7859405,7860476-7860660,7860747-7860821,
7860852-7861313,7861411-7861482,7861629-7861775,
7861888-7862043,7862136-7862306,7862505-7862675,
7862763-7862828,7864302-7864387,7864505-7864667
Length = 600
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 141 TDIAWLKLLNSERARAGAAPINEDQLEKVIEELEIS 176
T+I L+L SERAR A D+LEK+ E+L+++
Sbjct: 65 TEIRALRL--SERAREKAVEELTDELEKMFEKLKLT 98
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.129 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,705,381
Number of Sequences: 37544
Number of extensions: 242427
Number of successful extensions: 628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 14,793,348
effective HSP length: 78
effective length of query: 112
effective length of database: 11,864,916
effective search space: 1328870592
effective search space used: 1328870592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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