GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001993-TA|BGIBMGA001993-PA|undefined
         (190 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc fin...   178   4e-45
AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB, ...   178   4e-45
AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA, ...   178   4e-45
AY118778-1|AAM50638.1| 1430|Drosophila melanogaster GH12223p pro...    43   2e-04
AE013599-323|AAF59276.1| 1430|Drosophila melanogaster CG1845-PA ...    43   2e-04
AE014297-3551|AAF56299.2|  290|Drosophila melanogaster CG13615-P...    29   3.0  

>AY321364-1|AAP84718.1| 3241|Drosophila melanogaster PHD zinc finger
           protein rhinoceros protein.
          Length = 3241

 Score =  178 bits (433), Expect = 4e-45
 Identities = 94/166 (56%), Positives = 116/166 (69%), Gaps = 22/166 (13%)

Query: 32  WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLTPSEYWIITDTWKQDWE 91
           WQ R V+D+KMSSIYNRS++EAPAEL+RKDLISAMKLPD+EPL   EY I+TD WKQ+WE
Sbjct: 124 WQARSVADIKMSSIYNRSSTEAPAELYRKDLISAMKLPDSEPLANYEYLIVTDPWKQEWE 183

Query: 92  RGVQVPVNPDSLPAPKVKIIENP-RSP--NFQ-----------------EFHFTT--PAR 129
           +GVQVPVNPDSLP P V ++  P  SP  +F+                 + H+ T   A 
Sbjct: 184 KGVQVPVNPDSLPEPCVYVLPEPVVSPAHDFKLPKNRYLRITKDEHYSPDLHYLTNVVAL 243

Query: 130 AEAACSYDLDATDIAWLKLLNSERARAGAAPINEDQLEKVIEELEI 175
           AE  C+YD+D  D AWL+L NS+RA+ GA PIN  Q E+VIEELE+
Sbjct: 244 AENTCAYDIDPIDEAWLRLYNSDRAQCGAFPINATQFERVIEELEV 289


>AE014296-31|AAS64921.1| 3241|Drosophila melanogaster CG7036-PB,
           isoform B protein.
          Length = 3241

 Score =  178 bits (433), Expect = 4e-45
 Identities = 94/166 (56%), Positives = 116/166 (69%), Gaps = 22/166 (13%)

Query: 32  WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLTPSEYWIITDTWKQDWE 91
           WQ R V+D+KMSSIYNRS++EAPAEL+RKDLISAMKLPD+EPL   EY I+TD WKQ+WE
Sbjct: 124 WQARSVADIKMSSIYNRSSTEAPAELYRKDLISAMKLPDSEPLANYEYLIVTDPWKQEWE 183

Query: 92  RGVQVPVNPDSLPAPKVKIIENP-RSP--NFQ-----------------EFHFTT--PAR 129
           +GVQVPVNPDSLP P V ++  P  SP  +F+                 + H+ T   A 
Sbjct: 184 KGVQVPVNPDSLPEPCVYVLPEPVVSPAHDFKLPKNRYLRITKDEHYSPDLHYLTNVVAL 243

Query: 130 AEAACSYDLDATDIAWLKLLNSERARAGAAPINEDQLEKVIEELEI 175
           AE  C+YD+D  D AWL+L NS+RA+ GA PIN  Q E+VIEELE+
Sbjct: 244 AENTCAYDIDPIDEAWLRLYNSDRAQCGAFPINATQFERVIEELEV 289


>AE014296-30|AAF47343.1| 3201|Drosophila melanogaster CG7036-PA,
           isoform A protein.
          Length = 3201

 Score =  178 bits (433), Expect = 4e-45
 Identities = 94/166 (56%), Positives = 116/166 (69%), Gaps = 22/166 (13%)

Query: 32  WQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLTPSEYWIITDTWKQDWE 91
           WQ R V+D+KMSSIYNRS++EAPAEL+RKDLISAMKLPD+EPL   EY I+TD WKQ+WE
Sbjct: 124 WQARSVADIKMSSIYNRSSTEAPAELYRKDLISAMKLPDSEPLANYEYLIVTDPWKQEWE 183

Query: 92  RGVQVPVNPDSLPAPKVKIIENP-RSP--NFQ-----------------EFHFTT--PAR 129
           +GVQVPVNPDSLP P V ++  P  SP  +F+                 + H+ T   A 
Sbjct: 184 KGVQVPVNPDSLPEPCVYVLPEPVVSPAHDFKLPKNRYLRITKDEHYSPDLHYLTNVVAL 243

Query: 130 AEAACSYDLDATDIAWLKLLNSERARAGAAPINEDQLEKVIEELEI 175
           AE  C+YD+D  D AWL+L NS+RA+ GA PIN  Q E+VIEELE+
Sbjct: 244 AENTCAYDIDPIDEAWLRLYNSDRAQCGAFPINATQFERVIEELEV 289


>AY118778-1|AAM50638.1| 1430|Drosophila melanogaster GH12223p
           protein.
          Length = 1430

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 90  WERGVQVPVNPDSLPAPKVKIIENPRSP-NFQEFHFTTPARAEAACSYDLDATDIAWLKL 148
           W R VQVPV   +   P  ++ + P  P  +  F   +    +    YD+D  D AWL+ 
Sbjct: 179 WAR-VQVPVARVA-EIPDYRVSDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEH 236

Query: 149 LNSERARAGAAPINEDQLEKVIEELE 174
           +N ER R G   +  D +E +++ LE
Sbjct: 237 MNEERQRLGLNAVGIDTMELLMDRLE 262


>AE013599-323|AAF59276.1| 1430|Drosophila melanogaster CG1845-PA
           protein.
          Length = 1430

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 90  WERGVQVPVNPDSLPAPKVKIIENPRSP-NFQEFHFTTPARAEAACSYDLDATDIAWLKL 148
           W R VQVPV   +   P  ++ + P  P  +  F   +    +    YD+D  D AWL+ 
Sbjct: 179 WAR-VQVPVARVA-EIPDYRVSDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEH 236

Query: 149 LNSERARAGAAPINEDQLEKVIEELE 174
           +N ER R G   +  D +E +++ LE
Sbjct: 237 MNEERQRLGLNAVGIDTMELLMDRLE 262


>AE014297-3551|AAF56299.2|  290|Drosophila melanogaster CG13615-PA
           protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 96  VPVNPDSLPAPKVKIIENPRSPNFQEFHFTTP 127
           VP NP SLP   V +  NP  P  Q F+F  P
Sbjct: 96  VPANPVSLPPQPVIVPLNPADP-IQSFYFAYP 126


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.314    0.129    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,537,400
Number of Sequences: 52641
Number of extensions: 411098
Number of successful extensions: 1360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1352
Number of HSP's gapped (non-prelim): 9
length of query: 190
length of database: 24,830,863
effective HSP length: 81
effective length of query: 109
effective length of database: 20,566,942
effective search space: 2241796678
effective search space used: 2241796678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)