Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001993-TA|BGIBMGA001993-PA|undefined
(190 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 38 0.006
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 38 0.006
U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical pr... 33 0.17
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z77660-3|CAB01171.1| 471|Caenorhabditis elegans Hypothetical pr... 30 1.2
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 3.7
U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical pr... 27 6.4
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 27 6.4
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 27 6.4
Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical pr... 27 8.5
Z75550-11|CAA99927.2| 444|Caenorhabditis elegans Hypothetical p... 27 8.5
Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 37.5 bits (83), Expect = 0.006
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 81 IITDTWKQDWERGVQVPVNPDSLP------------------APKVKIIENPRSPNFQEF 122
+I+D WK ++ G Q +PD LP PK +I+ N S +F E
Sbjct: 97 MISDNWKPEYSGGTQELAHPDELPQTIVNDDDFWLKPKDFFSTPKKRIVCNRNSVDFDE- 155
Query: 123 HFTTPARAEAACSYDLDATDIAWLKLLNSER-ARAGAAPINEDQLEKVIEELEISMLK 179
+ A Y++ A D+A+L+ +N ER G + ++I+ELE K
Sbjct: 156 NIHEEVTTRDALHYEITAHDMAFLQKINMERKLLTGDTYLPMATFIRIIKELETEAFK 213
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 37.5 bits (83), Expect = 0.006
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 81 IITDTWKQDWERGVQVPVNPDSLP------------------APKVKIIENPRSPNFQEF 122
+I+D WK ++ G Q +PD LP PK +I+ N S +F E
Sbjct: 138 MISDNWKPEYSGGTQELAHPDELPQTIVNDDDFWLKPKDFFSTPKKRIVCNRNSVDFDE- 196
Query: 123 HFTTPARAEAACSYDLDATDIAWLKLLNSER-ARAGAAPINEDQLEKVIEELEISMLK 179
+ A Y++ A D+A+L+ +N ER G + ++I+ELE K
Sbjct: 197 NIHEEVTTRDALHYEITAHDMAFLQKINMERKLLTGDTYLPMATFIRIIKELETEAFK 254
>U80442-5|AAB37668.2| 794|Caenorhabditis elegans Hypothetical
protein T20F5.6 protein.
Length = 794
Score = 32.7 bits (71), Expect = 0.17
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 113 NPRSPNFQEFHFTTPARAEAACSYDLDATDIAWLKLLNSERARAGAAPINEDQLEKVIEE 172
NP +PNF+ P + + DL A ++ W++ RAR GA P ED + + E
Sbjct: 715 NPDAPNFKNLQ---PLQVQPYLR-DLRALELEWIQKAQDRRARGGAQPPVEDVEQNPVVE 770
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
F35A5.1 protein.
Length = 1274
Score = 31.1 bits (67), Expect = 0.52
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 17 PSTSKRRRME-PEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKLPDNEPLT 75
P+ SK+ E P DPL + D K++ ++ +E P E + +S EP
Sbjct: 1169 PAPSKKPDTEDPADPLGGPK-TKDPKLNK---KAPAEKPTEKPKPKEVSKEPPKPTEPPK 1224
Query: 76 PSEYWIITDTWKQDWERGVQVPVNPDSLPAPKVKIIENP 114
P+ WK WE P ++PAPK E+P
Sbjct: 1225 PAA----PKKWKPPWEDDPDEPEADFTMPAPKKPDTEDP 1259
>Z77660-3|CAB01171.1| 471|Caenorhabditis elegans Hypothetical
protein F38H4.3 protein.
Length = 471
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 7 KRATVTRGEEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASE-APAELFRKDLISA 65
KR+ E+P TS++ +P +P + ++D+ M ++ + + AE+ +L A
Sbjct: 111 KRSVDDDVEKPQTSQKPPQKPSEPDAESINMNDILMENVLKTTEEDRTEAEIDENELKKA 170
Query: 66 MKLPDNEP 73
+K D P
Sbjct: 171 LKKSDEAP 178
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 143 IAWLKLLNSERARAGA-APINEDQLEKVIEELEISMLKLR--TSQRITRL 189
++ +KL E R+ A A + EDQ++K +E+LE S ++R T R RL
Sbjct: 1777 VSLVKLKGEELLRSAAEAGVGEDQIKKRMEDLEQSWGQIRDLTGNRHQRL 1826
>U97192-2|AAO38678.1| 622|Caenorhabditis elegans Hypothetical
protein C01F4.2b protein.
Length = 622
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 127 PARAEAACSYDLDATDIAWLKLLNSERARA--GAAPINEDQLEKVIEELEISMLKLRTSQ 184
P A + S +TD AW K L+S R+ GA + + + E+E S L+L +Q
Sbjct: 278 PKYAYSHASSTSSSTDSAW-KSLDSMTWRSVDGAEVVLRGARLENLSEIERSALQLLAAQ 336
Query: 185 RITRL 189
R+T++
Sbjct: 337 RLTKM 341
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.4
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 127 PARAEAACSYDLDATDIAWLKLLNSERARA--GAAPINEDQLEKVIEELEISMLKLRTSQ 184
P A + S +TD AW K L+S R+ GA + + + E+E S L+L +Q
Sbjct: 278 PKYAYSHASSTSSSTDSAW-KSLDSMTWRSVDGAEVVLRGARLENLSEIERSALQLLAAQ 336
Query: 185 RITRL 189
R+T++
Sbjct: 337 RLTKM 341
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 7 KRATVTRGEEPSTSKRRRMEPEDPLW-QLRPV 37
+R+T T PS K R MEP +W + +P+
Sbjct: 109 RRSTPTVSRRPSLQKSRIMEPRTDVWPEAKPI 140
>Z93379-6|CAB07591.2| 1108|Caenorhabditis elegans Hypothetical
protein F21H7.9 protein.
Length = 1108
Score = 27.1 bits (57), Expect = 8.5
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 21 KRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISAMKL 68
KR+ ME +D LWQ V+ +++ + ++S +EA F ++ K+
Sbjct: 503 KRKEMERQDLLWQ---VAFVELQQVQSKSRAEASMHSFASGPSTSTKM 547
>Z75550-11|CAA99927.2| 444|Caenorhabditis elegans Hypothetical
protein T22C1.11 protein.
Length = 444
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 30 PLWQLRPVSDLKMSS--IYNRSASEAPAELFRKDLISAMKLPDNEPLTPSE 78
P WQ SD K+ + IYN+ E KD S + + +PL PSE
Sbjct: 358 PEWQSGLSSDQKLVAHRIYNKRYRERMKSSAVKDEASRSQSREEQPLEPSE 408
>Z47356-5|CAA87418.1| 173|Caenorhabditis elegans Hypothetical
protein T15H9.5 protein.
Length = 173
Score = 27.1 bits (57), Expect = 8.5
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 6 TKRATVTRGEEPSTSKRRRMEPEDPLWQLRPVSDLKMSSIYNRSASEAPAELFRKDLISA 65
+K + E+ ++ + PE ++ +S+ K+ S + + P E KD+
Sbjct: 46 SKNQKLPSAEKSVEECKKPVSPEKKKSPIKVLSEKKLKS-KKKEEDKEPDEKVEKDVKKE 104
Query: 66 MKLPDNEPL 74
+K +NEPL
Sbjct: 105 VKADNNEPL 113
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.129 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,852,122
Number of Sequences: 27539
Number of extensions: 210761
Number of successful extensions: 648
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 16
length of query: 190
length of database: 12,573,161
effective HSP length: 77
effective length of query: 113
effective length of database: 10,452,658
effective search space: 1181150354
effective search space used: 1181150354
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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