Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001992-TA|BGIBMGA001992-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
(146 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 62 3e-11
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 58 4e-10
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 52 5e-08
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 50 2e-07
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 48 8e-07
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 47 1e-06
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 32 0.040
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 2.7
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 3.5
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 25 3.5
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 25 6.1
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 24 8.1
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 62.5 bits (145), Expect = 3e-11
Identities = 30/98 (30%), Positives = 55/98 (56%)
Query: 16 PISFRDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPI 75
P + +D H A LLK F R+L EP++ + + + + + + R+ + LP
Sbjct: 568 PEDYENDVHAVADLLKIFFRELREPLIPDNHQRDFIDAGNVEDESRRRDAVHRAINDLPD 627
Query: 76 ENYKLLKYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
NY +++L L K+K+ S +NKM+ +NLA+++GP +
Sbjct: 628 ANYSTIRHLTIHLAKIKENSDVNKMSTNNLAIIWGPTI 665
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 58.4 bits (135), Expect = 4e-10
Identities = 33/133 (24%), Positives = 64/133 (48%)
Query: 12 NQGEPISFRDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILE 71
N+ + +D + K +LR+L P++TYD Y + + + + + I++++
Sbjct: 800 NEDTVLDPSEDISAVTSVFKQYLRNLPNPIITYDQYFPFITAANCASFQDKLDGFIMVIK 859
Query: 72 RLPIENYKLLKYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLAWPPSGQMSLQAIAPINA 131
LP + ++L+ + + L +V S N+MT NLAVVF P L P + + N
Sbjct: 860 SLPPAHAEILQLIIRHLARVAAYSHANRMTSKNLAVVFSPTLIRDPDNSRDVIDMTVKNY 919
Query: 132 FTDFTLENQESIF 144
F +++ +F
Sbjct: 920 SLAFLIDHVHEVF 932
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 51.6 bits (118), Expect = 5e-08
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 3 TVKQLQNSCNQGEPISFRD-----DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWP 57
T+K L+ N+G D H+ A LLK +LR+L +L +++ + P
Sbjct: 1113 TIKHLKEQFNEGVDYDLLSSDEEFDVHVIAGLLKLYLRNLPTNLLDTSMHKLFELLPNVP 1172
Query: 58 NAEKPRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLAWP 116
N ++ +LP EN+ LL L L ++ +NKM N+ +VF P L P
Sbjct: 1173 NDSAALGELCDVISKLPPENFALLDSLLHHLRRIIAFEKVNKMNIRNVCIVFSPTLNIP 1231
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 49.6 bits (113), Expect = 2e-07
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 2 VTVKQLQNSCNQGEPISFRDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEK 61
V V + +N + E ++ D +LKT+L L EPV+ YEE+L+ + E+
Sbjct: 826 VLVDEFENGSIRMEHLT--SDLFACTSVLKTYLHRLPEPVIPGTQYEELLEAEKIEKEEE 883
Query: 62 PRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLAWPPSGQM 121
+ +++ L + + ++L L +V + N M N++ VF P L +
Sbjct: 884 KIERVVEVMKTLHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKNVSTVFAPTLMRDKVNRF 943
Query: 122 SLQAIAPINAFTDFTLENQESI 143
LQ + F L+N + I
Sbjct: 944 DLQHATKKSTALQFMLDNVDKI 965
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 47.6 bits (108), Expect = 8e-07
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 24 HIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILI--LERLPIENYKLL 81
H AA + + F+ + E V+ + YE + + PN V++ ++ LPI N +LL
Sbjct: 123 HDAANVFRRFINLMPEHVIPLEYYERFREPMTIPNLTDNERVEMYRRRIDELPIPNRQLL 182
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLAWPPSGQM 121
YL L S N MT NLA +F P + P ++
Sbjct: 183 LYLLDLLSVFAMNSSKNLMTADNLAAIFQPGILSHPDHEV 222
>SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1150
Score = 47.2 bits (107), Expect = 1e-06
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 20 RDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYK 79
++ P A LLK FLR+L +P+LT+ L+ + + E+ V L + LP +
Sbjct: 910 QETPIQLAALLKKFLRELPDPLLTFKLFGLFITSSKLESEEERMRVLHLTICLLPKGHRD 969
Query: 80 LLKYLFQFLWKVKDRSCL-----NKMTCSNLAVVFGPNLAWPPSGQMSLQAIAPINAFTD 134
++ +F FL+ V S + +KM NLA V PN+ + S ++ I A
Sbjct: 970 TMEVIFGFLYWVASFSHIDDEVGSKMDIHNLATVITPNILYSKSNDPVDESFLAIEA-VH 1028
Query: 135 FTLENQE 141
+EN E
Sbjct: 1029 LLIENFE 1035
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 31.9 bits (69), Expect = 0.040
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 23 PHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLLK 82
P A L+K R L P+ + + + + +++ LI + + KL +
Sbjct: 228 PIAACSLIKHLFRSLPSPLFSAEFLNGLTDHMD-SGIDYAVSLQKLIDASMDKNSQKLAR 286
Query: 83 YLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLA 114
+F L+++ N M NLA+ GP+ +
Sbjct: 287 LIFSLLYQITQHEQENMMNAQNLALCIGPSFS 318
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.8 bits (54), Expect = 2.7
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 3 TVKQLQNSCNQGEPISFRDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKP 62
TV+ L NS ++ I+ D+P + AV + + +E+P L D+ E K W + +
Sbjct: 693 TVQMLNNSSHRCMMIT-GDNP-LTAVYVAEQVGIVEKPTLVLDIKHENEKILEWKSTDDT 750
Query: 63 RNV 65
N+
Sbjct: 751 INL 753
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 3.5
Identities = 18/79 (22%), Positives = 30/79 (37%)
Query: 31 KTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLLKYLFQFLWK 90
+T L P+L D Y I +PN + LER N + Y+F L
Sbjct: 693 RTCTISLNAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERSSAFNDEQFNYVFNTLTS 752
Query: 91 VKDRSCLNKMTCSNLAVVF 109
+ D+ + C + + +
Sbjct: 753 ISDQCISSHKYCMDACLSY 771
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 3.5
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 43 TYDLYEEILK--FQSWPNAEKPRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKM 100
T+D+Y+ L W + + + +RL +NY LLK LF + +D + L +
Sbjct: 330 TFDMYKSELDTGILHWSPSHRSEDFWHQNAKRLNEDNYALLKKLFHIVQYNEDNTSL-AV 388
Query: 101 TCSNL 105
C +L
Sbjct: 389 ACHDL 393
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 86 QFLWKVKDRSCLNKMTCSNLAVVFGPNLAWPPSGQMSLQAIAPINAFTDFTLENQES 142
++L +V ++ + M L FG + PS ++ +A +N TD+ ES
Sbjct: 209 EYLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYES 265
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 30 LKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLLKY 83
LKT LR L T ++E+ L ++ P + +P N +LI +R P +K +++
Sbjct: 22 LKTSLRALS----TRPIFEKRLLAET-PFSIRPSNASVLIAKRSPKFGWKQVRF 70
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,105
Number of Sequences: 5004
Number of extensions: 28826
Number of successful extensions: 73
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 60
Number of HSP's gapped (non-prelim): 13
length of query: 146
length of database: 2,362,478
effective HSP length: 67
effective length of query: 79
effective length of database: 2,027,210
effective search space: 160149590
effective search space used: 160149590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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