Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001992-TA|BGIBMGA001992-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
(146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 58 3e-09
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536... 41 5e-04
12_02_0615 + 21242819-21243201,21244510-21244630,21244728-212448... 38 0.002
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 38 0.002
11_01_0332 + 2483743-2484131,2486062-2486182,2486307-2486426,248... 38 0.004
01_07_0307 + 42647006-42647202,42647287-42647866 36 0.017
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 35 0.030
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642... 34 0.052
12_02_0490 + 19639226-19639228,19639718-19640133,19640793-196408... 29 1.5
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 27 6.0
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 27 6.0
08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301... 27 6.0
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697... 27 7.9
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 27 7.9
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 27 7.9
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 27 7.9
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 58.0 bits (134), Expect = 3e-09
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 4 VKQLQNSCNQGEPISFRD--DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEK 61
++QL + N+ F D +P A L+K +L + EP+ T+ LY+E+ + +
Sbjct: 179 LQQLVSLYNEDSGAPFPDGVNPIDVAALIKCYLASIPEPLTTFSLYDELRDARV--SIAD 236
Query: 62 PRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNLAW 115
RN IL++LP NY L+++ L +V +S LNKM +LAV F P + W
Sbjct: 237 LRN----ILKKLPNVNYMTLEFVTALLLRVSRKSSLNKMDSRSLAVEFAPLIMW 286
>07_03_0032 -
12651989-12652636,12652726-12652956,12653515-12653634,
12653768-12653891,12654023-12654366
Length = 488
Score = 40.7 bits (91), Expect = 5e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H A L+K + R+L E VL E++L N E+ + ++ LP LL
Sbjct: 187 DVHCLASLIKAWFRELPEGVLDSLSPEQVLHC----NTEEEC---VELVRLLPPTQAALL 239
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
++ +F+ V + NKM N+A+VF PN+
Sbjct: 240 NWVVEFMADVVEEEESNKMNARNVAMVFAPNM 271
>12_02_0615 +
21242819-21243201,21244510-21244630,21244728-21244847,
21245015-21245245,21245365-21245862
Length = 450
Score = 38.3 bits (85), Expect = 0.002
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H A L+K + R+L E VL E++L+ S + ++++ L R P + LL
Sbjct: 199 DVHCLASLIKAWFRELPEGVLDSLSPEQVLQCNS-----EGEFLELVTLLR-PTQA-ALL 251
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
+ + + V + LNKM N+A+VF PN+
Sbjct: 252 NWAVELMADVVEEEELNKMNARNIAMVFAPNM 283
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 38.3 bits (85), Expect = 0.002
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H A L+K + R+L VL E++++ QS + + + + LP LL
Sbjct: 218 DVHCLAGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCAR-------VAKCLPPTEAALL 270
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
+ + V +NKM N+A+VF PN+
Sbjct: 271 DWAVNLMADVVQEEQINKMNARNIAMVFAPNM 302
>11_01_0332 +
2483743-2484131,2486062-2486182,2486307-2486426,
2486897-2487127,2487205-2487783
Length = 479
Score = 37.5 bits (83), Expect = 0.004
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H + L+K + R+L VL E++++ QS + + + + LP LL
Sbjct: 201 DIHCLSGLIKAWFRELPSGVLDSIPPEQVMQCQSEEDCAR-------VAKCLPPAEAALL 253
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
++ + V +NKM N+A+VF PN+
Sbjct: 254 EWAVNLMADVVQEEQINKMNARNIAMVFAPNM 285
>01_07_0307 + 42647006-42647202,42647287-42647866
Length = 258
Score = 35.5 bits (78), Expect = 0.017
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H A L+K + R+L +L E+ + QS + + + RLP LL
Sbjct: 138 DVHCLAGLIKAWFRELPGGMLDSLPAAEVTRCQSADDCAR-------LCARLPAAKAALL 190
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
+ Q + V NKM N+A+VF PN+
Sbjct: 191 DWAVQLMADVAREERSNKMGSRNVAMVFAPNM 222
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 34.7 bits (76), Expect = 0.030
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H A L+K + R+L VL E+++ N E+ L+ LP LL
Sbjct: 205 DLHCLAGLIKAWFRELPTGVLDSLTPEQVMHC----NTEEDC---ALLASMLPPVEAALL 257
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
+ + V + NKM N+A+VF PN+
Sbjct: 258 DWAINLMADVVEHENYNKMNARNIAMVFAPNM 289
>02_05_0309 +
27762613-27763070,27763940-27764060,27764168-27764287,
27764633-27764863,27764964-27765503
Length = 489
Score = 33.9 bits (74), Expect = 0.052
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 22 DPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLL 81
D H L+K + R+L VL E+++ N E+ L+ LP LL
Sbjct: 224 DMHCLTGLIKAWFRELPSGVLDSLTPEQVMHC----NTEEEC---ALLASTLPPVEAALL 276
Query: 82 KYLFQFLWKVKDRSCLNKMTCSNLAVVFGPNL 113
+ + V + NKM N+A+VF PN+
Sbjct: 277 DWAINLMADVVEHENYNKMNARNIAMVFAPNM 308
>12_02_0490 +
19639226-19639228,19639718-19640133,19640793-19640846,
19640983-19641045,19641122-19641365,19641634-19641706,
19641911-19641939
Length = 293
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 59 AEKPRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKMTCSN 104
AEK + +K +IL+ LP+E+ LLK F DR+ L C++
Sbjct: 68 AEKEKELKEMILDLLPLESTALLKPSFAAYNSHIDRAILCCTPCTS 113
>10_08_0472 -
18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 58 NAEKPRNVKILILERLPIENYKLLKYLFQFLWKVKDR--SCLNKMTCSNLAVVFGPNLAW 115
NAEK +++ + + ++ ++N L++ + K KD + LN + + AV L+W
Sbjct: 893 NAEKAKSI-VQDIAKIRLDN-ALVQAVALLRQKKKDEVVASLNDLLACDAAVPASKPLSW 950
Query: 116 PPSGQM 121
P SG++
Sbjct: 951 PTSGEL 956
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 86 QFLWKVKDRSCLNKMTCSNLAVVFGPNLAWPPSGQMSLQ 124
++LWK ++ + ++CS++ VF PN P S + +L+
Sbjct: 230 EWLWKQSNKDIIT-LSCSHVGDVFPPNFTVPLSLKSTLR 267
>08_01_0341 +
3011238-3011246,3011824-3012192,3012412-3012505,
3012594-3012631,3012862-3013008,3013912-3014011,
3014615-3015042,3015234-3015389
Length = 446
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 91 VKDRSCLNKMTCSNLAVVFGPNLAWPPSGQMSLQAIAPINAFTDFTLENQESIF 144
+KD+SC + + V+ PN + S ++ Q + P + F ++ E+ +
Sbjct: 86 LKDQSCARQGIFRKVIVILNPNSGFRSSREVFYQKVQPTLELSGFMMQVVETAY 139
>06_03_0287 -
19168685-19168735,19168847-19168884,19169517-19169727,
19171461-19171643,19171879-19172028,19172161-19172256,
19172378-19172464,19172535-19172741,19172823-19173047,
19173150-19173261,19173397-19173453,19175522-19176882
Length = 925
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 44 YDLYEEILKFQSWPNAEKPRNVKILILERLPIENYKLLKYLFQFLWKVKDRSCLNKMTCS 103
Y L +F P V L+L ++ + N + L+KVKD S L
Sbjct: 861 YQLVSLANEFSRSLGLNNPPAVPKLVLRKMGLNNIPVYATTLGTLYKVKDMSVLALKNIG 920
Query: 104 NLAV 107
NL++
Sbjct: 921 NLSI 924
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 LKTFLRDLEEPVLTYDLY-EEILKFQSWPNAEKPRN 64
L + +R LE+P++ YD Y E+I + AEK RN
Sbjct: 394 LSSMIRILEQPLVQYDSYVEQIEREIEEDLAEKKRN 429
>01_07_0290 -
42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 5 KQLQNSCNQGEPISFRDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRN 64
+ N G+P+ +A K L + ++++D +E+L ++ A+
Sbjct: 789 RDASNCVTPGDPVGILAATAVANAAYKAVLAPNQNNIISWDSMKEVLLTRASTKADANHR 848
Query: 65 VKILILERLPIEN 77
IL L + EN
Sbjct: 849 KVILYLNQCSCEN 861
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 94 RSCLNKMTCSNLAVVFGPNLAWP---PSGQMSLQAIAPINAFTDFTL 137
RS + K++C LA +FG L +P QM +Q P NA F +
Sbjct: 231 RSVVLKLSCGALAGLFGQTLTYPLDVVRRQMQVQNKQPHNANDAFRI 277
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,101,677
Number of Sequences: 37544
Number of extensions: 153947
Number of successful extensions: 313
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 16
length of query: 146
length of database: 14,793,348
effective HSP length: 76
effective length of query: 70
effective length of database: 11,940,004
effective search space: 835800280
effective search space used: 835800280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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