GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001992-TA|BGIBMGA001992-PA|IPR000198|RhoGAP,
IPR008936|Rho GTPase activation protein
         (146 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       23   4.1  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    22   9.4  
AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione S-tran...    22   9.4  

>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 20  RDDPHIAAVLLKTFLRDLEEPVLTYDLYEEILKFQSW 56
           R D    A++++    D++E +  +DL E ++  Q W
Sbjct: 430 RGDGAFGALIIRKD-NDIQELLYDHDLSEHVITVQDW 465


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 29  LLKTFLRDLEEPVLTYDLYEEILKFQSWPNAEKPRNVKIL 68
           +LK  + D+E  +    L ++ LK +   N E+PRNVK++
Sbjct: 568 ILKEKMLDVETFLPLDYLQKKPLK-ERLRNIEEPRNVKLI 606


>AF515521-1|AAM61888.1|  233|Anopheles gambiae glutathione
           S-transferase u1 protein.
          Length = 233

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 92  KDRSCLNKMTCSNLAVVF 109
           KDR+ +N   C NLA ++
Sbjct: 88  KDRALVNHRLCFNLAFLY 105


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.138    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,455
Number of Sequences: 2123
Number of extensions: 5726
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 146
length of database: 516,269
effective HSP length: 58
effective length of query: 88
effective length of database: 393,135
effective search space: 34595880
effective search space used: 34595880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)