GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001991-TA|BGIBMGA001991-PA|IPR000509|Ribosomal protein
L36E
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    85   4e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    84   5e-18
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   0.60 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   1.8  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   2.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   2.4  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   3.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      25   4.2  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   4.2  
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    24   5.6  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    24   7.4  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   7.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    23   9.7  
SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr...    23   9.7  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    23   9.7  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 84.6 bits (200), Expect = 4e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)

Query: 25  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 84
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 85  RRLGTHIRAKRKREELSNVLAQMR 108
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 84.2 bits (199), Expect = 5e-18
 Identities = 43/84 (51%), Positives = 58/84 (69%)

Query: 25  KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 84
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 85  RRLGTHIRAKRKREELSNVLAQMR 108
           +RLGT  RAK K EEL++V+   R
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSR 96


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 0.60
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 8/53 (15%)

Query: 57   VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 108
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
          Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 53 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 96
          ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35 IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 15  HKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDL---VREVVGHAQYEKRAMELL 71
           H T+ +S   K I     R+   R+  L  K  +F++++     +V G    EKR +E L
Sbjct: 686 HLTSDMSMCEKRIDQVLQRVMDLRVPDLSDKEKQFIKEIGNYKEKVTGERGIEKR-VETL 744

Query: 72  K 72
           K
Sbjct: 745 K 745


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 13/39 (33%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 69  ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 107
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
          scaffold protein Isu1|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 35 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 69
          RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27 RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)

Query: 70  LLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 109
           + ++ +D+  L+FL+R+ G     K+K+   +  ++  RK
Sbjct: 245 IARMERDESILEFLQRQSGNKKSYKKKKNNTAEGISPERK 284


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 55  REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 99
           R+ +   +Y K A  L+K + ++R+++  ++R     +AKR   E
Sbjct: 303 RQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARE 347


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 32  IRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHI 91
           I IR   L  +QT   K      +E +   QY +  +  +  +K K   + L++R    +
Sbjct: 270 ILIRSCMLDLIQTTEEKLYEQYRQEQMKVRQYGEPKLRTIDNAKFKEEEENLRKRFTEQV 329

Query: 92  RAKRKR 97
           R +  R
Sbjct: 330 RVEETR 335


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 16  KTTKISAGRKGITDKAIRIR--PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 73
           K   ++  ++ + +  +R++  P  L+  Q   S+  R+L ++     Q EK+  EL++ 
Sbjct: 424 KQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEELMQT 480

Query: 74  SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 107
                   FL   +    +AKRK  E+  +L+ +
Sbjct: 481 RIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSL 514


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 14  GHKTTKISAGRKGITDKAIRIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 66
           G+   K S      TDK   I+P  LKGL       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 67  AME 69
            ++
Sbjct: 789 EIK 791


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 27  ITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMEL-LKVSKDKRALK 81
           +T++  +I  +  K L        R L+RE V    Y + A+E+ L++   K  ++
Sbjct: 652 VTEEVKKIEASLRKRLPIGFQASYRMLIREYVNGHGYSQHALEMALQILSSKETIQ 707


>SPAC17A5.13 |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 235

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 23 GRKGITDKAIRIRPARLKGLQT 44
          G+K   D  +R++PA L G  T
Sbjct: 4  GKKDYIDSPLRMQPASLSGAST 25


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 11  LRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 62
           L+K     ++ +G   +      ++P  L G   +  KF    +RE+  H +
Sbjct: 359 LKKDSDFKEVPSGDINLESAIALVKPTILLGCSGQPGKFTEKAIREMSKHVE 410


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.135    0.367 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 393,664
Number of Sequences: 5004
Number of extensions: 12689
Number of successful extensions: 49
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 15
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)