Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001991-TA|BGIBMGA001991-PA|IPR000509|Ribosomal protein
L36E
(119 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 103 4e-23
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 103 5e-23
01_06_0675 + 31092877-31092916,31093349-31093503,31093570-310936... 31 0.19
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 1.3
03_02_1022 + 13260647-13260834,13260965-13261070,13262052-132621... 29 1.3
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 1.7
03_06_0682 - 35516081-35518303 28 2.3
11_02_0038 - 7631462-7634428,7635975-7636250 27 3.0
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481... 27 4.0
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 26 7.0
03_01_0192 - 1534013-1535147,1535249-1535370,1535497-1535556,153... 26 9.2
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 103 bits (247), Expect = 4e-23
Identities = 56/106 (52%), Positives = 69/106 (65%), Gaps = 10/106 (9%)
Query: 3 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 62
P+ + VG+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 63 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 108
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 103 bits (246), Expect = 5e-23
Identities = 56/106 (52%), Positives = 69/106 (65%), Gaps = 10/106 (9%)
Query: 3 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 62
P+ + VG+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 63 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 108
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>01_06_0675 +
31092877-31092916,31093349-31093503,31093570-31093677,
31094283-31094487,31094858-31094955,31095052-31095135,
31095227-31095304,31095462-31095554,31095646-31095675,
31095932-31096273,31096353-31096434,31096527-31096622,
31096728-31096907,31097002-31097108,31097207-31097308,
31097611-31097666,31097749-31098002,31098077-31098240,
31098564-31098747,31098825-31098969,31099561-31099661,
31099803-31099870
Length = 923
Score = 31.5 bits (68), Expect = 0.19
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 24 RKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL 83
R GI IR + + +K + K+ ++ L V G + + A+ L+V K +++
Sbjct: 246 RIGIQADHIRNQNSIIKTREDKYRSKIKALETLVNGTNEENEMAINRLEVVKVEKSKIDE 305
Query: 84 KRRLGTH--IRAKRKREELSNVLAQMRK 109
KR+LG IR R++E N++A + +
Sbjct: 306 KRKLGEQDMIRLIREKENAENIIASLHQ 333
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 61 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 102
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>03_02_1022 +
13260647-13260834,13260965-13261070,13262052-13262169,
13262271-13262539
Length = 226
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 65 KRAME--LLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 109
KRA++ L VS DK+ALK G H R K++R+E +L + +
Sbjct: 45 KRALKNKALSVSLDKKALKDFVT--GFHKRKKKRRKEAQKILQEKER 89
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 30 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 89
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 90 HIRAKRKREELSNVLA 105
+R + + S VLA
Sbjct: 698 E---ERLQSQESKVLA 710
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.9 bits (59), Expect = 2.3
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 36 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 91
P + L+ + F+++++ +++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 92 RAKRKREELSNVL 104
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 76 DKRALKFLKRRLGTHIRAKRKREELSNV 103
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>01_06_1058 -
34147025-34147069,34147190-34147339,34147983-34148117,
34148391-34148449,34149142-34149258,34149448-34149625,
34149715-34149798,34150133-34150201,34150385-34150525,
34150781-34150873,34151338-34151466,34152033-34152371,
34152624-34152674
Length = 529
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 64 EKRAMELLKVSKDKRALKFLKRRLGTHIRA--KRKREELSNVLAQMRK 109
E+RA+ L ++ K + A+ +++ L H A R++EE+ + ++R+
Sbjct: 215 EERALALAEIEKARTAIAIVEKGLQEHDAASSSREKEEIEGLRKEVRE 262
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 76 DKRALKFLKRRLGTHIRAKRKREELSNVL 104
DK L K +G + +R+RE+LSN+L
Sbjct: 498 DKVLLNVRKLYIGLSMSKRRQREQLSNIL 526
>03_01_0192 -
1534013-1535147,1535249-1535370,1535497-1535556,
1535666-1535764,1535839-1535889,1535974-1536175,
1536709-1536911,1537264-1537350,1537435-1537589,
1537640-1537723,1538121-1538325,1538497-1538724
Length = 876
Score = 25.8 bits (54), Expect = 9.2
Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 29 DKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLG 88
D+ I+ + + + L+ + S+ RDL RE A + ++ L KV+ + A + +KR+
Sbjct: 316 DEIIQSQKSNICELEAQLSE-ERDLRREERDKAAEDLKSA-LHKVNAE--AQEEIKRQAE 371
Query: 89 THIRAKRKREELSNVLAQMRK 109
H+R +R+++E+ + L + K
Sbjct: 372 AHLRQQREQKEVISKLQESEK 392
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.135 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,776
Number of Sequences: 37544
Number of extensions: 84016
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 11
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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