Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001991-TA|BGIBMGA001991-PA|IPR000509|Ribosomal protein
L36E
(119 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0) 122 1e-28
SB_43600| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.33
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.58
SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05) 29 1.0
SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_45611| Best HMM Match : p450 (HMM E-Value=0) 28 1.8
SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12) 28 1.8
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09) 27 3.1
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 27 4.1
SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0) 27 4.1
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05) 27 5.4
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 5.4
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_12434| Best HMM Match : SAB (HMM E-Value=4.6) 26 7.2
SB_786| Best HMM Match : EGF (HMM E-Value=0) 26 7.2
SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09) 26 9.5
SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 26 9.5
SB_26304| Best HMM Match : RVT_1 (HMM E-Value=2.3e-27) 26 9.5
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 26 9.5
SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27) 26 9.5
SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6) 26 9.5
SB_3691| Best HMM Match : DUF1520 (HMM E-Value=5.7) 26 9.5
SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37) 26 9.5
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 26 9.5
SB_37459| Best HMM Match : DUF1520 (HMM E-Value=5.7) 26 9.5
SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1) 26 9.5
SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 26 9.5
SB_28242| Best HMM Match : RVT_1 (HMM E-Value=2.2e-27) 26 9.5
SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6) 26 9.5
SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15) 26 9.5
SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 26 9.5
SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8) 26 9.5
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.5
SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6) 26 9.5
>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
Length = 100
Score = 122 bits (293), Expect = 1e-28
Identities = 62/103 (60%), Positives = 75/103 (72%), Gaps = 10/103 (9%)
Query: 7 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 66
+AVGL+KGHK TK + +P+R KG K KFVRD+VREVVG A YEKR
Sbjct: 1 MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50
Query: 67 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 109
MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK
Sbjct: 51 VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRK 93
>SB_43600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 247
Score = 30.7 bits (66), Expect = 0.33
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 12 RKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELL 71
R H + +G + T K R+ P + G+ TK S V DL +GH ++ E
Sbjct: 102 RATHDVRRKDSGNERTTQKIKRLPPTMVFGVPTKPSTPVYDL----LGHKYQDRWLEERR 157
Query: 72 KVSKDKRALKFLKRRLGTHIRAKR 95
K RA + KR + +I R
Sbjct: 158 KAEDGMRARQKQKRHVDKNIYETR 181
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 29.9 bits (64), Expect = 0.58
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 9 VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 56
V RKGHK T + G+KGI K R+ +R Q KHS K +R +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168
Query: 57 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 103
+ H+ E KV K K+ ++F K + G ++ + E+ V
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKV 1212
>SB_10762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 647
Score = 29.5 bits (63), Expect = 0.77
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 61 AQYEKRAMELLKVSKDKRALKFLKRRLGTHI-RAKRKREELSNVLAQMRK 109
AQ+++R E K+ KD LK K L T + RA++ E+++ Q+R+
Sbjct: 466 AQFKERTEEFEKMKKDVVGLKNKKSSLETSVQRAEKDLEKMAGPQTQLRE 515
>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 29.5 bits (63), Expect = 0.77
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 40 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 77
+GL+ K + ++ E GHA Y+K L KVS+++
Sbjct: 32 RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69
Score = 29.5 bits (63), Expect = 0.77
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 40 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 99
+GL+ K R ++ E GH Y+K L KVS+ K A + L G H K++
Sbjct: 88 RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145
Query: 100 L 100
L
Sbjct: 146 L 146
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 40 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 97
+GL+ + + ++ E GH Y+K L KVS+ K A + L G + K R
Sbjct: 60 RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116
Score = 27.5 bits (58), Expect = 3.1
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 53 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 103
++ E GH Y+K L KVS+ K A + L G H K++ L V
Sbjct: 17 ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65
>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
Length = 493
Score = 29.1 bits (62), Expect = 1.0
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
Query: 2 APRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVREVV 58
AP+ E V K K K+S ++ + +AI A LK + K + +R++++
Sbjct: 269 APQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKSKP 327
Query: 59 GHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 94
+ +K+ A L K + K ALK K+RL T IRA+
Sbjct: 328 KLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364
>SB_16794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1407
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 16 KTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMEL 70
K+ IS G + KA+R ++ GL+ K K++ +L +E+ H + E L
Sbjct: 850 KSGVISGGVSDLKTKALRWDEKQVDGLKRKRDKYLTEL-KELAAHRRKEPELQNL 903
>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
Length = 847
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 74 SKDKRALKFLKRRLGTHIRAKRKREELSN 102
+K RALKFLK RL +R KR E L N
Sbjct: 59 NKSPRALKFLKTRL-QDLRKKRDSETLRN 86
>SB_35915| Best HMM Match : DUF593 (HMM E-Value=0.12)
Length = 371
Score = 28.3 bits (60), Expect = 1.8
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 25 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK--RALKF 82
+G+ DK +I +K LQ++ + L +E A+++LK+ +K R KF
Sbjct: 213 RGMEDKG-QISAGEIKRLQSEKRELEMQL-KEAEDERTAFDGAVQMLKLELEKVERRFKF 270
Query: 83 LKRRLGTHI-RAKRKREELSNVLAQM 107
+KR L T + + E+ +N+L +M
Sbjct: 271 MKRELLTKTQQLEEVSEQKNNLLHEM 296
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 27.9 bits (59), Expect = 2.4
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 11 LRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKF---VRDLVREVVGHAQYEKRA 67
L K T KI G G+ A R P L T + V L+ + V + +Y K A
Sbjct: 450 LEKPDWTCKIDEGSAGLV--AARWSPDGRHVLSTADFQIRITVWSLISKSVSYIRYPKHA 507
Query: 68 MELLKVSKDKRALKFLKRR 86
E L SKD + + +RR
Sbjct: 508 YEGLDFSKDGKYMALAERR 526
>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
Length = 1248
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 35 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 78
RP +L+ ++ + +VR L + G +Y + L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668
>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 55 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 99
RE+ + + + E++K+ K K++ K +K++ + K+K+EE
Sbjct: 3 REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712
>SB_13359| Best HMM Match : DMAP1 (HMM E-Value=0)
Length = 535
Score = 27.1 bits (57), Expect = 4.1
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 8 AVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRA 67
AV + ++T R+ TD A+ +P + K + + K + RE+ + R
Sbjct: 97 AVNRVQTQRSTGYGLSRRQGTDSAVNRQPKKPKRVSEQPLKRPEGMHRELFALLYNDNRD 156
Query: 68 MELLKVSKDKRALKFLKRRLG-THIR 92
L S K LK +LG H+R
Sbjct: 157 SPSLAPSDTTHGYKQLKAKLGRKHVR 182
>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
Length = 525
Score = 26.6 bits (56), Expect = 5.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 47 SKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR---EELSNV 103
SKF + L R + HA + + K +D + K+ + +L T IR +K + N
Sbjct: 239 SKFFKRLNRIINKHAPVKTISKRRSKDLRDTQNYKYYRNKLSTLIRISKKEYYIDYFENN 298
Query: 104 LAQMRK 109
+ M+K
Sbjct: 299 VTNMKK 304
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 42 LQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELS 101
L TK K V L R V Q E+ A L K+A K LK + H+ R++E L
Sbjct: 2185 LNTKSEKEVEMLSR--VNELQ-EELAKALESAEAGKKAEKQLKEQESEHVELSREKEALQ 2241
Query: 102 NVL 104
L
Sbjct: 2242 KQL 2244
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.6 bits (56), Expect = 5.4
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671
>SB_12434| Best HMM Match : SAB (HMM E-Value=4.6)
Length = 160
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 45 KHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVL 104
+++K VR L R + GHA+ + + E K + ++FL+ T RA EL L
Sbjct: 2 ENNKTVRHLGRHLTGHAKNDALSSENNKTVRHHGRIEFLQPGGSTISRAAATAVELQFAL 61
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 53 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
L R V+ Y+ + + + ++ ++FL +RL ++ KRK
Sbjct: 1235 LTRNVIYRNPYQPITYDYRTIGEQRQRVRFLAKRLSKILKRKRK 1278
>SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09)
Length = 772
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 653 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 706
>SB_53136| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 934
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 587 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 640
>SB_26304| Best HMM Match : RVT_1 (HMM E-Value=2.3e-27)
Length = 372
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 277 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 330
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 712
>SB_25074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 576 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 629
>SB_15856| Best HMM Match : RVT_1 (HMM E-Value=1.3e-27)
Length = 514
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 258 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 311
>SB_6874| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 349
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 135 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 188
>SB_3691| Best HMM Match : DUF1520 (HMM E-Value=5.7)
Length = 219
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 72 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 125
>SB_58785| Best HMM Match : RnaseH (HMM E-Value=0.37)
Length = 279
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 334 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 387
>SB_37459| Best HMM Match : DUF1520 (HMM E-Value=5.7)
Length = 219
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 72 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 125
>SB_30990| Best HMM Match : RhoGEF (HMM E-Value=2.1)
Length = 261
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_28694| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 1045
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 620 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 673
>SB_28242| Best HMM Match : RVT_1 (HMM E-Value=2.2e-27)
Length = 381
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 277 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 330
>SB_25606| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 343
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 109 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 162
>SB_22848| Best HMM Match : RVT_1 (HMM E-Value=5.1e-15)
Length = 630
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 169 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 222
>SB_8019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 560 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 613
>SB_5227| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 334
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 595 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 648
>SB_2983| Best HMM Match : RnaseH (HMM E-Value=1.6)
Length = 279
Score = 25.8 bits (54), Expect = 9.5
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 28 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 80
TDK +++ PA+++ + S + V+ ++G AQY K +L ++K R L
Sbjct: 16 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.135 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,208
Number of Sequences: 59808
Number of extensions: 98265
Number of successful extensions: 389
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 44
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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