Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001991-TA|BGIBMGA001991-PA|IPR000509|Ribosomal protein
L36E
(119 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 107 2e-24
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 30 0.38
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 30 0.38
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 30 0.38
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 30 0.38
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 30 0.38
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 29 0.66
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 29 0.66
AL117202-20|CAB57898.3| 1261|Caenorhabditis elegans Hypothetical... 29 0.87
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 1.5
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 1.5
Z81029-1|CAB02697.1| 465|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 3.5
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 4.6
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 26 6.1
AL132898-12|CAB60945.3| 576|Caenorhabditis elegans Hypothetical... 26 6.1
AC006834-4|AAF40012.1| 392|Caenorhabditis elegans Hypothetical ... 26 8.1
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 107 bits (258), Expect = 2e-24
Identities = 55/103 (53%), Positives = 72/103 (69%), Gaps = 10/103 (9%)
Query: 7 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 66
+AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 67 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 109
+E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 45 KHSKFVRDLVREVVGHAQY--EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
K SK RD+ ++ H + + E+LK+SK+ ++ +K+RL + AK K
Sbjct: 16 KESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMVEAKEK 69
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 45 KHSKFVRDLVREVVGHAQY--EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
K SK RD+ ++ H + + E+LK+SK+ ++ +K+RL + AK K
Sbjct: 1012 KESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMVEAKEK 1065
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c
protein.
Length = 1198
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 45 KHSKFVRDLVREVVGHAQY--EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
K SK RD+ ++ H + + E+LK+SK+ ++ +K+RL + AK K
Sbjct: 770 KESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMVEAKEK 823
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 45 KHSKFVRDLVREVVGHAQY--EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
K SK RD+ ++ H + + E+LK+SK+ ++ +K+RL + AK K
Sbjct: 1012 KESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMVEAKEK 1065
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 45 KHSKFVRDLVREVVGHAQY--EKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 96
K SK RD+ ++ H + + E+LK+SK+ ++ +K+RL + AK K
Sbjct: 767 KESKSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMVEAKEK 820
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 35 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 80
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 29.5 bits (63), Expect = 0.66
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 35 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 80
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721
>AL117202-20|CAB57898.3| 1261|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1261
Score = 29.1 bits (62), Expect = 0.87
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 34 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 78
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 39 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 78
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 39 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 78
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>Z81029-1|CAB02697.1| 465|Caenorhabditis elegans Hypothetical
protein C01A2.1 protein.
Length = 465
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 25 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK 72
K D+ ++ P + K ++T K V+D V +++ Q+ + ++L+K
Sbjct: 34 KAEEDELLKEEPTKEKTVETPMEKLVKDRVWKIITLDQWSQETVKLIK 81
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 37 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 94
AR+K + K K + + R+ + +A E LK+ ++++ K L +R+ + K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594
Query: 95 RKREE 99
RK EE
Sbjct: 595 RKAEE 599
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 50 VRDLVREVVGHAQYEKRAMELLKV 73
+RD + EV+G+ Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 53 LVREVVGHAQYEKRAMELLKV 73
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 75 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 107
K+ R +KF R L H+R + K +ELS + M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240
>AL132898-12|CAB60945.3| 576|Caenorhabditis elegans Hypothetical
protein Y59A8B.22 protein.
Length = 576
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 13/59 (22%)
Query: 4 RFEIAVGLRKGH----KTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVV 58
+FE GL K KT ++ A +K +TD L L+ KHSK L+R+VV
Sbjct: 520 KFEEITGLSKNELKELKTRRVQAFKKNLTD---------LAELEIKHSKAEISLLRDVV 569
>AC006834-4|AAF40012.1| 392|Caenorhabditis elegans Hypothetical
protein ZK973.8 protein.
Length = 392
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 41 GLQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 73
G T S VRD + V+G+ +YE E+L V
Sbjct: 126 GYSTPASGAVRDFLVGVIGNRRYENCMFEILTV 158
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.135 0.367
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,828
Number of Sequences: 27539
Number of extensions: 68504
Number of successful extensions: 239
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 19
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)
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