Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(358 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 59 1e-09
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 29 1.0
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 28 2.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 28 2.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 3.1
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 26 7.1
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 26 7.1
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 26 9.4
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 58.8 bits (136), Expect = 1e-09
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 4/116 (3%)
Query: 156 LLKYLMFTLDKYVEQD--YSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLV 213
L+K + K +++D Y+ V+F + + LS KAY D KN+KA+Y++
Sbjct: 40 LIKEAYNHVHKLIQKDERYTAVFFAHDSTVFSYLGLSL--KAYYGMDYYLHKNVKAVYVI 97
Query: 214 HPTNVIRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYDKTL 269
H + +V + L S KF RK YLN + +L++YI L L +P V ++D+ +
Sbjct: 98 HTDWMSKVAIRTLLSIASPKFTRKFRYLNSISDLNKYIPLSHLKLPPIVYEFDRNV 153
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 29.1 bits (62), Expect = 1.0
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 225 MLRPAISVKFGRKMMYLNYLHELHQYISLEK-LCIPDSVLQYD--KTLLSKSPRAAEIAQ 281
+++ + F K M + H H ++++ + DS+ + K L +KSP +
Sbjct: 396 LVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLGTKSPESCRKQY 455
Query: 282 KVLGRFLGSSSSAKDDQGEKTPRPKTQQFGVSLQFIRANNTNVIDGIPPIVRQCVEFLS 340
+ S+ ++DQG+K + K ++ +F A++ +++ + RQC E +S
Sbjct: 456 EKTIASYSSNQRQEEDQGKKRKKRKKKKSKGKRKFYVADSLKLLEHVQ---RQCGEAIS 511
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.9 bits (59), Expect = 2.3
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 154 DQLLKYLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNL 207
+Q L+ L+ L + D+ ++G N + P + W W+A ++FD + + L
Sbjct: 3097 EQELELLISGLPEIDIDDWKNNTEYHGYNVSS-PQVQWFWRAVRSFDEEERAKL 3149
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.9 bits (59), Expect = 2.3
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 236 RKMMYLNYLHELHQYISLEKLCIPDSVLQYDKTLLSKSPRAAE 278
+ + Y+ ++ LH+YI E + D++ +Y + + + A+E
Sbjct: 1161 KSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASE 1203
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 268 TLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQGEKTPRPKTQQFGVSLQFIRANNTNVIDG 327
+L SKSP + I L +++ K+P P T+ + ++Q R+ + D
Sbjct: 393 SLKSKSPSVSNILSNQLSPISSANNDVMARLQPKSPIPATKSYSATIQTPRSPSLRRADS 452
Query: 328 IPPIVRQCVEFLSRPDVLSKKASIG 352
I++ V L PD K A G
Sbjct: 453 TSHIIK--VPHL--PDTSVKTAKTG 473
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 267 KTLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQGEKTP 303
K ++S+ RA +I V+ +FL S +++QG TP
Sbjct: 13 KVIISRDYRA-DIPMSVVEKFLPLKSEVEEEQGFSTP 48
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 178 HYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVH 214
+YG N PPL +LW D ++ +VH
Sbjct: 92 NYGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTLVVH 128
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 141 AACRLPPSNELNPDQLLKYLMFTLDKYVEQDYSVVYFHYGLNSKNKPPL 189
A CR N D LL+Y + + + +D +Y G+NS + P L
Sbjct: 292 AMCRYMNLNAFGTDPLLRYNIRHRMRQIRRDDRAIYIE-GINSLSIPEL 339
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,890
Number of Sequences: 5004
Number of extensions: 64489
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 8
length of query: 358
length of database: 2,362,478
effective HSP length: 74
effective length of query: 284
effective length of database: 1,992,182
effective search space: 565779688
effective search space used: 565779688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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