GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040...    74   2e-13
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    63   3e-10
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638     49   7e-06
02_05_0251 - 27155905-27156127,27156228-27156697                       47   3e-05
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973...    31   1.4  

>10_08_0180 +
           15502809-15503312,15503399-15503454,15503934-15504053,
           15504190-15504260,15504603-15504696,15504772-15504978,
           15505406-15505657,15505781-15505889,15506112-15506179,
           15506278-15506347,15506429-15506503,15506600-15506691,
           15506779-15506860
          Length = 599

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 38/140 (27%), Positives = 79/140 (56%), Gaps = 5/140 (3%)

Query: 151 LNPDQLLKYLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKAL 210
           L+ ++ + +++   +  +++ YS+VYFH   + + +P L ++ +  +   RK+++NL A+
Sbjct: 460 LDLERFVLHVVKEFEPLIQKPYSIVYFHSAASLQPQPDLGFMKRLQQILGRKHQRNLHAI 519

Query: 211 YLVHPTNVIRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYDKTL- 269
           Y++HPT  +R     ++  +  +  +K++Y++ L  L +Y+  E+L IPD V Q+D  + 
Sbjct: 520 YVLHPTLGLRTAILAMQMFVDGEVWKKVVYVDRLVHLFRYVPREQLTIPDFVFQHDLEVN 579

Query: 270 ----LSKSPRAAEIAQKVLG 285
               L   PR   I Q+  G
Sbjct: 580 GGRGLIVDPRTKHIYQRPSG 599


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 32/107 (29%), Positives = 63/107 (58%), Gaps = 8/107 (7%)

Query: 168 VEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLK--------ALYLVHPTNVI 219
           +++ YS+VYFH   + + +P L ++ +  +   RK+++NL         A+Y++HPT  +
Sbjct: 330 IQKPYSIVYFHSAASLQVRPDLGFMKRLQQILGRKHQRNLHVGISYDHTAIYVLHPTLGL 389

Query: 220 RVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYD 266
           R     L+  +  +  +K++Y++ L +L +Y+  E+L IPD V Q+D
Sbjct: 390 RTAILALQLFVDGEVWKKVIYVDRLVQLFRYVPREQLTIPDFVFQHD 436


>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
          Length = 272

 Score = 48.8 bits (111), Expect = 7e-06
 Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 147 PSNELNPDQLLKYLMFTL-DKYVEQDYSVVYFHYGLNSK-NKPPLSWLWKAYKAFDRKYK 204
           P+  +  D+L KY++  L  +  E  + ++Y H  + S  N P +S L   Y+    +YK
Sbjct: 101 PAPVIGGDRLKKYVLHKLRTELPEGPFCLLYMHSTVQSDDNNPGMSILRGVYEDLPPEYK 160

Query: 205 KNLKALYLVHPTNVIRVVWQML-RPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVL 263
           + L+ LY +HP    R+    L R  +S     K+ Y++ L  L   I   ++ IPD V+
Sbjct: 161 ERLQILYFLHPGLRSRLAIATLGRLFLSGGLYWKIKYVSRLEYLWGDIRKGEVEIPDFVI 220

Query: 264 QYDKTL 269
            +DK L
Sbjct: 221 DHDKIL 226


>02_05_0251 - 27155905-27156127,27156228-27156697
          Length = 230

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 2/103 (1%)

Query: 169 EQDYSVVYFHYGLN-SKNKPPLSWLWKAYKAFDRKYKKNLKALYLVHPTNVIRVVWQML- 226
           E+++ VVY H  ++   N P ++ +  AY+A     K+ L+A+Y VHP    R+ +  L 
Sbjct: 91  EREFVVVYVHSLVDRGDNFPGVAAIRAAYEALPAAAKERLRAVYFVHPGFQARLFFATLG 150

Query: 227 RPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYDKTL 269
           R   S     K+ Y++ L  L +++S  ++ +P+   ++D+ L
Sbjct: 151 RFLFSSGLYEKLRYMSRLEYLWEHVSKGEMEVPECARRHDEEL 193


>06_03_1514 +
           30696632-30696724,30696857-30697009,30697226-30697309,
           30697451-30697569,30697769-30697870,30699071-30699190,
           30699285-30699350,30699563-30699629,30699720-30699773,
           30700379-30700534,30701130-30701228
          Length = 370

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 166 KYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVHP 215
           K++ Q+Y+V+ FHY  N      L W  KA     R   K   A   +HP
Sbjct: 110 KFLNQNYTVMLFHYDGNVDGWHNLEWSDKAIHILARNQTKWWFAKRFLHP 159


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,646,095
Number of Sequences: 37544
Number of extensions: 357445
Number of successful extensions: 806
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 5
length of query: 358
length of database: 14,793,348
effective HSP length: 83
effective length of query: 275
effective length of database: 11,677,196
effective search space: 3211228900
effective search space used: 3211228900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)