GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (358 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 88   1e-17
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               88   1e-17
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   2e-13
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 33   0.27 
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.82 
SB_5238| Best HMM Match : HECT (HMM E-Value=0)                         31   1.1  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                30   3.3  
SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)               29   4.4  
SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         29   5.8  
SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)         29   5.8  
SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)                 29   5.8  
SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)             29   7.7  
SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)         29   7.7  
SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.7  
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                29   7.7  

>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 42/108 (38%), Positives = 65/108 (60%)

Query: 159 YLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVHPTNV 218
           Y +  LD+ V +DY VVYFH     +N+PP+S+L + Y   D KY++NLKA Y+VHPT  
Sbjct: 294 YFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 353

Query: 219 IRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYD 266
            R+V        +     K+ +L+ +  L+ +I+ ++L IP  VL+YD
Sbjct: 354 ARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYD 401


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 42/108 (38%), Positives = 65/108 (60%)

Query: 159 YLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVHPTNV 218
           Y +  LD+ V +DY VVYFH     +N+PP+S+L + Y   D KY++NLKA Y+VHPT  
Sbjct: 4   YFISVLDRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIVDNKYRRNLKAFYIVHPTVW 63

Query: 219 IRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSVLQYD 266
            R+V        +     K+ +L+ +  L+ +I+ ++L IP  VL+YD
Sbjct: 64  ARIVTWFFTTFTASSVKEKVHFLSGVQYLYDWINPDQLDIPAYVLEYD 111


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 159 YLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALY 211
           Y+  TLD+YVE DY++VYFHYGL SKNKP  SWL + YK  DRK+   +   Y
Sbjct: 181 YMKHTLDQYVESDYTIVYFHYGLTSKNKPNFSWLHQIYKELDRKHDARIAVRY 233



 Score = 36.3 bits (80), Expect = 0.038
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 305 PKTQQFGVSLQFIRANNTNVIDGIPPIVRQCVEFL 339
           PKTQQFGV+L ++R  N   +  IP  +R  VEF+
Sbjct: 250 PKTQQFGVALSWLRETNNGEV--IPRAIRTSVEFI 282


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 244 LHELHQYISLEKLCIPDSVLQYDKTLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQGEKTP 303
           +H+L   I LE   +PD VL  D T LSK P      ++ L  +  + SSA + Q +KTP
Sbjct: 313 IHQLEGDIRLE---MPDLVLGDDITELSKDPEIVNTLEETLHNWEVTISSALEMQLKKTP 369

Query: 304 R 304
           +
Sbjct: 370 Q 370


>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 31.9 bits (69), Expect = 0.82
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 288 LGSSSSAKDDQGEKTPRPKTQQFGVSLQFIRANNTNVIDG 327
           LG  SS+ DD+ E+T +P++ +   S++F  A   N   G
Sbjct: 337 LGDESSSDDDEKERTVKPRSGKHSGSVRFQTAEQVNTAPG 376


>SB_5238| Best HMM Match : HECT (HMM E-Value=0)
          Length = 212

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 173 SVVYFHYGLNSKNKPPLSWLWKAYKAFDRKYKKNLKALYLVHPT 216
           + VY HY  NSK    + W W+A KA+D   +K ++ L  V  T
Sbjct: 105 NTVYRHYTRNSKQ---VMWFWQAVKAYDN--EKRIRLLQFVTGT 143


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)

Query: 252  SLEKLCIPDS-----VLQYDKTL-LSKSPRAAEIAQKVLGRFLGSSSSAKD 296
            S+EK  +P S      L  D  + + KSPR  EI + V G +LG + +A+D
Sbjct: 2429 SIEKTFVPKSDAPSLFLPSDSQIFMKKSPRTQEIKECVPGTYLGKAQNAED 2479


>SB_32519| Best HMM Match : Pkinase (HMM E-Value=7.3e-39)
          Length = 1486

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 257 CIPDSVLQYDKTLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQG 299
           C+P SV+   +  L +  +   +   +LG+ +G  S AK  QG
Sbjct: 26  CLPPSVVHVSREELKRFLKCKRVGNYLLGKTIGEGSFAKVKQG 68


>SB_56469| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 652

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 317 IRANNTNVIDGIPPIVRQCV---EFLSRPDVLSKKASIG 352
           I  + T ++DG+PP+   C+    FLS+P  LS    +G
Sbjct: 323 IGLSETKILDGLPPLTNTCMTGYNFLSQP-TLSDAGGVG 360


>SB_38448| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-12)
          Length = 343

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 317 IRANNTNVIDGIPPIVRQCV---EFLSRPDVLSKKASIG 352
           I  + T ++DG+PP+   C+    FLS+P  LS    +G
Sbjct: 79  IGLSETKILDGLPPLTNTCMTGYNFLSQP-TLSDAGGVG 116


>SB_10116| Best HMM Match : RVT_1 (HMM E-Value=2.5e-33)
          Length = 759

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 317 IRANNTNVIDGIPPIVRQCV---EFLSRPDVLSKKASIG 352
           I  + T ++DG+PP+   C+    FLS+P  LS    +G
Sbjct: 55  IGLSETKILDGLPPLTNTCMTGYNFLSQP-TLSDAGGVG 92


>SB_21614| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-41)
          Length = 1047

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 317 IRANNTNVIDGIPPIVRQCV---EFLSRPDVLSKKASIG 352
           I  + T ++DG+PP+   C+    FLS+P  LS    +G
Sbjct: 333 IGLSETKILDGLPPLTNTCMTGYNFLSQP-TLSDVGGVG 370


>SB_10952| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-08)
          Length = 558

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 317 IRANNTNVIDGIPPIVRQCV---EFLSRPDVLSKKASIG 352
           I  + T ++DG+PP+   C+    FLS+P  LS    +G
Sbjct: 79  IGLSETKILDGLPPLTNTCMTGYNFLSQP-TLSDVGGVG 116


>SB_9896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 259 PDSVLQYDKTLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQGEKTPRPKTQQFGVSLQFIR 318
           P  V   +K     +P       K  GRF G  S   +DQ E        +F + L   +
Sbjct: 298 PSPVFPSNKQQNFPTPAKTSTVSKPEGRFNGGKSDINNDQLEALKSEILAEFRMELDSFK 357

Query: 319 ANNTNVIDG-IPPI 331
            +    +DG IPP+
Sbjct: 358 QDIIADVDGFIPPL 371


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 188 PLSWLWKAYKAFDRKYKKNLKAL 210
           P+  LW + KA+DR+Y+K+ K +
Sbjct: 132 PMYVLWNSPKAYDREYRKSYKRI 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,184
Number of Sequences: 59808
Number of extensions: 420080
Number of successful extensions: 814
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 16
length of query: 358
length of database: 16,821,457
effective HSP length: 83
effective length of query: 275
effective length of database: 11,857,393
effective search space: 3260783075
effective search space used: 3260783075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)