GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (358 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.       25   2.4  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   2.4  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    25   3.2  

>DQ974163-1|ABJ52803.1|  595|Anopheles gambiae serpin 4B protein.
          Length = 595

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 203 YKKNLKALYLVHPTNVIRVVWQMLRPAIS 231
           YK N+  +Y++ P N  R   Q L P ++
Sbjct: 294 YKHNVSTMYVIMPNNSNRAKLQQLIPKLT 322


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 231  SVKFGRKMMYLNYLHELHQYISLEKL--CIPDSVLQYDKTLLSKSPRAAEIAQKVLGRFL 288
            S+++G     L   H +    S+ +L  CI  S  Q   ++ SKS +      ++   F 
Sbjct: 2987 SIEYGNMTSILPSYHNITNNNSVMRLEYCIDCS--QDASSITSKSYKVTNWINEIFEHFF 3044

Query: 289  GSSSSAKDDQGEKTPRP 305
             + +  K DQ ++   P
Sbjct: 3045 NTENQGKQDQEDRKVNP 3061


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 3   PEHQPKLNPVRAFQVLHGCNGETEENYTSLSEYHDYEPSLEF 44
           P   P +  V   Q     NGET+   TS + Y   E   EF
Sbjct: 258 PHIYPWMKRVHIGQSTVNANGETKRQRTSYTRYQTLELEKEF 299


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,548
Number of Sequences: 2123
Number of extensions: 12805
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 4
length of query: 358
length of database: 516,269
effective HSP length: 65
effective length of query: 293
effective length of database: 378,274
effective search space: 110834282
effective search space used: 110834282
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)