GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (358 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66521-15|CAA91403.1|  444|Caenorhabditis elegans Hypothetical p...   153   2e-37
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    36   0.044
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    36   0.044
Z66521-16|CAI70416.1|  245|Caenorhabditis elegans Hypothetical p...    35   0.10 

>Z66521-15|CAA91403.1|  444|Caenorhabditis elegans Hypothetical
           protein W02B12.8a protein.
          Length = 444

 Score =  153 bits (370), Expect = 2e-37
 Identities = 88/216 (40%), Positives = 127/216 (58%), Gaps = 29/216 (13%)

Query: 142 ACRLPPSNELNPDQLLKYLMFTLDKYVEQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDR 201
           A RLP S E++  +LL+YL+  +DK V+QDY++VYFHYGL S NKPP+ WL++AYK  DR
Sbjct: 100 AYRLPSSKEIDHARLLQYLVQIIDKIVDQDYTIVYFHYGLRSHNKPPVRWLFQAYKQLDR 159

Query: 202 KYKKNLKALYLVHPTNVIRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDS 261
           ++KKNLKALY+VHPT  IR+++ + +  IS KF  K  Y+  + EL   +S+ +L +P  
Sbjct: 160 RFKKNLKALYVVHPTRFIRIIFSLFKGFISSKFENKFHYVMCIDELENALSVARLNLPSP 219

Query: 262 VLQYDKTLLSKSPRAAEIAQKVLGRFLGSSSSAKDDQGEKTPRPKTQQFGVSLQFIRANN 321
           +  +DK+                     S+ S + +     P P TQQFGV L+FI ++ 
Sbjct: 220 IRDHDKSF--------------------STQSNRPETPPAQPLP-TQQFGVPLEFILSHC 258

Query: 322 TNVIDGIPPIVRQCVEF-----LSRPDVLSKKASIG 352
                 IPPIV Q +E+     L+   V  K A+IG
Sbjct: 259 GG---NIPPIVDQLIEYLEAHALTMEGVFRKSANIG 291


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/75 (22%), Positives = 37/75 (49%)

Query: 203 YKKNLKALYLVHPTNVIRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSV 262
           + ++L  L L++P  +I V+WQ+ +  +      K+ +L+ + +L +Y+  E + +    
Sbjct: 193 FSEHLCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEAIPVEYGG 252

Query: 263 LQYDKTLLSKSPRAA 277
              D T  +  P  A
Sbjct: 253 TYRDDTGYADPPEGA 267


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 17/75 (22%), Positives = 37/75 (49%)

Query: 203 YKKNLKALYLVHPTNVIRVVWQMLRPAISVKFGRKMMYLNYLHELHQYISLEKLCIPDSV 262
           + ++L  L L++P  +I V+WQ+ +  +      K+ +L+ + +L +Y+  E + +    
Sbjct: 193 FSEHLCKLLLINPPGIISVMWQVTKRLVDPNTVEKLAFLSNVEDLKKYLEPEAIPVEYGG 252

Query: 263 LQYDKTLLSKSPRAA 277
              D T  +  P  A
Sbjct: 253 TYRDDTGYADPPEGA 267


>Z66521-16|CAI70416.1|  245|Caenorhabditis elegans Hypothetical
           protein W02B12.8b protein.
          Length = 245

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 290 SSSSAKDDQGEKTPRPKTQQFGVSLQFIRANNTNVIDGIPPIVRQCVEF-----LSRPDV 344
           S+ S + +     P P TQQFGV L+FI ++       IPPIV Q +E+     L+   V
Sbjct: 29  STQSNRPETPPAQPLP-TQQFGVPLEFILSHCGG---NIPPIVDQLIEYLEAHALTMEGV 84

Query: 345 LSKKASIG 352
             K A+IG
Sbjct: 85  FRKSANIG 92


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,471,172
Number of Sequences: 27539
Number of extensions: 330291
Number of successful extensions: 652
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 5
length of query: 358
length of database: 12,573,161
effective HSP length: 82
effective length of query: 276
effective length of database: 10,314,963
effective search space: 2846929788
effective search space used: 2846929788
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)