GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001990-TA|BGIBMGA001990-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (358 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    24   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   2.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.1  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  

>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 4   EHQPKLNPVRAFQVLHGCNGETEENYTSLSEYHDYEPSLEFDDSELI 50
           E  P L P R FQ +    G T +  T +++        EF D+EL+
Sbjct: 71  ETLPSL-PDRKFQTVTSIEGNTFKTETQVNDSLKVTRLYEFSDNELL 116


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 169 EQDYSVVYFHYGLNSKNKPPLSWLWKAYKAFDR 201
           ++ +S++Y+ + + +K  PP  W   +YK   R
Sbjct: 108 KETFSLLYYEFDVATKEPPP--WETDSYKLIGR 138


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 21  CNGETEENYTSLSEYHD 37
           CN E EENY  L + ++
Sbjct: 110 CNVEAEENYNLLEDIYE 126


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 164 LDKYVEQDYSVVYF 177
           + KY +QDY  +YF
Sbjct: 428 VQKYQDQDYQPIYF 441


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 15/35 (42%), Positives = 16/35 (45%)

Query: 80  EENFEEELARDPRFTLSRLKLTSTINIAASGLDEE 114
           EEN EEE  R       RLKL    + A S L  E
Sbjct: 284 EENEEEEDGRGQSEAEKRLKLDEDADGAVSPLRRE 318


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,402
Number of Sequences: 429
Number of extensions: 4294
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 358
length of database: 140,377
effective HSP length: 58
effective length of query: 300
effective length of database: 115,495
effective search space: 34648500
effective search space used: 34648500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)