Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001989-TA|BGIBMGA001989-PA|undefined
         (353 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     30   2.4  
03_02_0061 + 5342338-5342401,5343025-5343131,5343962-5344009,534...    30   2.4  
06_01_0769 - 5745324-5746970                                           28   9.8  
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389...    28   9.8  
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458...    28   9.8  

>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 276 PGHYDVLKPKFFKRNKFGFNSSYDRPPGYQRVIVW---PGVGRYSVKELGCGIIGQGHRH 332
           PG    L   F  R     + S D PP  QR  VW    G G   V  L  GI+ Q  + 
Sbjct: 269 PGMLLALVLSFDHRKIKDMSVSQDMPPSKQRKYVWYALTGYGVGLVTALAAGILSQSPQP 328

Query: 333 VFLSKQDRTIGAII 346
             L     T+G ++
Sbjct: 329 ALLYLVPSTLGPVM 342


>03_02_0061 +
           5342338-5342401,5343025-5343131,5343962-5344009,
           5344297-5344399,5345152-5345234,5345271-5346089,
           5346189-5346338,5346420-5346797
          Length = 583

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%)

Query: 144 RAPHGSHSTRPTFEREEPCRFKNSTLNWSLAPNRYNIIDKNAIDQKHKKVVSLRGPYDLF 203
           RA   SH+ R +++      F   TL         N ID+   +     + SL+  YD F
Sbjct: 152 RAACVSHAFRRSWQHRPNLIFCIGTLGLDFI----NKIDRIIKNHSGIGIKSLQLEYDTF 207

Query: 204 TGKRDSSTIKNHFNTSLKCSAATW--PLALKGSLDKY 238
              R S++I  H N  L+ +   W   L L  SL  Y
Sbjct: 208 CNARRSASISYHLNNWLQIAVTPWIEELILTLSLSSY 244


>06_01_0769 - 5745324-5746970
          Length = 548

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)

Query: 35  RPAGCDPCLYSPQPL 49
           RPA  +PCL+SP PL
Sbjct: 503 RPASVEPCLHSPPPL 517


>04_03_0985 -
           21438036-21438116,21438373-21438495,21438903-21438995,
           21439176-21439388,21439589-21439687,21440248-21440317,
           21442549-21442619,21442817-21442954,21443034-21443132,
           21444061-21444144,21444268-21444324,21444594-21444683,
           21444886-21445026,21445778-21445882,21445962-21446114,
           21446215-21446316,21446404-21446562,21447039-21447222,
           21447336-21447418,21447523-21447588,21447736-21447793,
           21447903-21448003,21448269-21448355,21449063-21449185,
           21449285-21449364,21449857-21450066,21450159-21450270,
           21450709-21450927,21451356-21451726,21451866-21451965,
           21452544-21452752,21453232-21453337,21453435-21453767
          Length = 1439

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 216 FNTSLKCSAATWPLALKGSLDKYVNSHLGVMNKTNRSQPYRGRNALVDIVMSIRRPDD 273
           F++    S+   PL  +GS+     +    + ++  S+  +G N  ++I++S RR +D
Sbjct: 136 FSSGTASSSGAGPLGTEGSVKVVSTAKDNWVPQSRESEEVQGSNERLEIIISRRREED 193


>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
            34045969-34046092,34046168-34046294,34046821-34046882,
            34046972-34048023,34048167-34048556,34048667-34052628,
            34052710-34052796,34052885-34053004,34053096-34053152
          Length = 2122

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 7/109 (6%)

Query: 140  ETPFRAPHGSHSTRPTFEREEPCRFKNSTLNWSL---APNRYNIIDKNAIDQK-HKKVVS 195
            +T     H S+++R   E E+     N+     L   + +  + + +N  +Q+ H + + 
Sbjct: 1805 DTSDNGEHSSYTSRAVSEDEKTVDDHNAACAMDLHITSSSASSHVSENGCNQQSHGESLP 1864

Query: 196  LRGPYDLFTGKR--DSSTIKNHFNTSLKCSAATWPLALKGSLDKYVNSH 242
            +     + T     + + +KNHF TS  CS AT  L+  G L +  N H
Sbjct: 1865 VTSVDKVHTSDASCEDNKLKNHFITSEVCSDAT-NLSASGLLTEEENIH 1912


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,964
Number of Sequences: 37544
Number of extensions: 562200
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 6
length of query: 353
length of database: 14,793,348
effective HSP length: 83
effective length of query: 270
effective length of database: 11,677,196
effective search space: 3152842920
effective search space used: 3152842920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)