Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001989-TA|BGIBMGA001989-PA|undefined
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.57
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 27 3.0
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 27 5.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 5.3
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 7.0
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.0
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 7.0
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|... 26 7.0
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 9.3
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 81 YRNQKVLDLRKWQASLLGPAWHEISEPQKYEPACKNLSFGRARNKQKQSSVPGPGTYYKE 140
Y N + K S + P W+E+ Y P + LS G+ +N P YK
Sbjct: 120 YSNSPIEPFAKPNISYVNPQWNELD----YRPDSQKLSPGKEKNTLDLKHCLLPSPEYKA 175
Query: 141 TPFRAP 146
P + P
Sbjct: 176 PPAKKP 181
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 54 EVNKNRKVDKDPWRYKSELEDWAKNLGYRNQKVLDLRKWQASLLGPAWHEISEPQKY 110
+V +N K+ ++ + + L + + + G N + L W A++LGPA H + E + Y
Sbjct: 3 KVPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPA-HSVHENRIY 58
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 260 ALVDIVMSIRRPDDP 274
A+VD +++IRRPD+P
Sbjct: 169 AVVDAILTIRRPDEP 183
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 26.6 bits (56), Expect = 5.3
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 40 DPCLYSPQPLYKIFEVNKNRKVDKDPWRYKSELEDWAKNLGYRNQKVLD-LRKWQA--SL 96
D C+ S ++ + E+ V+KD YKS +++ N Y + +++ + + + +L
Sbjct: 1731 DYCMDSLAQIF-VDEIFGEVGVEKDSEDYKSNVKEIKGNKSYDSYEIVARISSFDSLSTL 1789
Query: 97 LGPAWHEISEP------QKYEPACKNLSFGRARNKQKQS 129
L P + + E +K + C+ LS G NKQ S
Sbjct: 1790 LRPVKNVLFETNVPKSLRKVDELCRRLSLGIVANKQSAS 1828
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 60 KVDKDPWRYKSELEDWAKNLGYRNQKVLDLRKWQASLLGPAWHEISEPQKYEPACKNLSF 119
KV ++ R KSEL D K+ G N K + +R + ++L E +KY+ + K +
Sbjct: 294 KVQEEISRLKSELRDLEKSGGSSNSKPVVVRPKKRNIL------TEELEKYKKS-KKVVL 346
Query: 120 GRARN 124
G+ +N
Sbjct: 347 GKRKN 351
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 331 RHVFLSKQDRTIGAIIPKAMN 351
+H FLSK+DR+ G I K+ N
Sbjct: 245 KHTFLSKKDRSKGKSIIKSQN 265
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 26.2 bits (55), Expect = 7.0
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 89 LRKWQASLLGPAWHEISEPQKYEPACKNLSFGRARNKQKQSSVPGPGTYYKETPFRAPHG 148
L+ W A +LG EISE K + + K+ + + +K + V + + F
Sbjct: 576 LQTWMARVLGDDKAEISEISKVQTSIKSATMIKGSTSKKVAVVSENNR--RLSIFDTRSS 633
Query: 149 SHSTRPTFEREEPCRFKNSTLNWSLAPNRYNII 181
S + F + L+W+ PN ++I+
Sbjct: 634 EFSEKEEFSSVFDDYGPINDLDWTSTPNSHSIL 666
>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 151 STRPTFEREEPCRFKNSTLNWSLAPNRYNII 181
ST+ T E P + NS W + PN ++
Sbjct: 38 STQNTGEESNPIYYTNSVFVWKIYPNSEKVV 68
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 9.3
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 52 IFEVNKNRKVDKDPWRYKSELEDWAKNLGYRNQKVLDLRKWQASLLGPAWHEI-SEPQKY 110
I + K + KD + YK+ + + Q V+DL Q+ + EI S +
Sbjct: 40 ICQKTKTVEAQKDDFEYKAMISAQINEMALMKQTVMDLEMQQSKVKDRYEEEITSLKAQL 99
Query: 111 EPACKNLSFG----RARNKQKQSSVPGPGTYYKETPFRAPHGS 149
E K ++ G ++ K ++SV G Y PF + + S
Sbjct: 100 EARRKEIASGVVPQSSKTKHGRNSV-SFGKYGNAGPFNSDNSS 141
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.137 0.433
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,672
Number of Sequences: 5004
Number of extensions: 86821
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 9
length of query: 353
length of database: 2,362,478
effective HSP length: 73
effective length of query: 280
effective length of database: 1,997,186
effective search space: 559212080
effective search space used: 559212080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -