GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001989-TA|BGIBMGA001989-PA|undefined
         (353 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51442| Best HMM Match : DUF1309 (HMM E-Value=0.1)                   56   4e-08
SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)                    33   0.27 
SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)              33   0.27 
SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)              31   1.4  
SB_40141| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                29   4.3  
SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)                 29   4.3  
SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)          28   10.0 

>SB_51442| Best HMM Match : DUF1309 (HMM E-Value=0.1)
          Length = 147

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 173 LAPNRYNIIDKNAIDQKHKKVVSLRGPYDLFTGKRDSSTIKNHFNTSLKCSAATWPLALK 232
           L P +Y +  ++  D+    VVS RGPYDLFTG+R+      +F   L+ +       LK
Sbjct: 4   LCPGQYEM--ESFTDEMASHVVSKRGPYDLFTGERNKPITVGYFAMPLRQNLGPGEYDLK 61

Query: 233 GSLDKYVNSHL---GVMNKTNRSQPY-RGRNALVDIVMSIRRPDDPGPGHY---DVLKPK 285
             L +    H    G   K  R   Y   R     +    R P +PGPG Y   D+ KP+
Sbjct: 62  SFLSENTGEHKQRHGKFLKVTRFPDYPTERIYCCSLSQCPRDPSEPGPGSYSAKDLGKPE 121

Query: 286 FFKRNKFG 293
             KR  FG
Sbjct: 122 AAKRPPFG 129


>SB_28082| Best HMM Match : A2M_comp (HMM E-Value=0)
          Length = 1013

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 109 KYEPACKNLSFGRARNKQKQSSVPGPGTYYKETPFRAPHGSHSTRPTFEREEPCRFKNST 168
           KY  A K L+    RNK +   + G   Y +E  +R P GS+S     ++E         
Sbjct: 464 KYLTAVKQLT-PAIRNKAEVFMIKG---YQREQTYRHPEGSYSAFGERDKEGSMWLTAFV 519

Query: 169 LNWSLAPNRYNIIDKNAIDQKHKKVVSLRGPYDLF--TGKRDSSTIK 213
           +       +Y  ID+ A+DQ    +VS + P   F   G   SS +K
Sbjct: 520 VKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSSYLK 566


>SB_35427| Best HMM Match : A2M_comp (HMM E-Value=4.6e-05)
          Length = 264

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 109 KYEPACKNLSFGRARNKQKQSSVPGPGTYYKETPFRAPHGSHSTRPTFEREEPCRFKNST 168
           KY  A K L+    RNK +   + G   Y +E  +R P GS+S     ++E         
Sbjct: 162 KYLTAVKQLT-PAIRNKAEVFMIKG---YQREQTYRHPEGSYSAFGERDKEGSMWLTAFV 217

Query: 169 LNWSLAPNRYNIIDKNAIDQKHKKVVSLRGPYDLF--TGKRDSSTIK 213
           +       +Y  ID+ A+DQ    +VS + P   F   G   SS +K
Sbjct: 218 VKSFAQARKYIYIDEKALDQSIFWMVSKQSPSGAFPKVGTVHSSYLK 264


>SB_10638| Best HMM Match : Myosin_N (HMM E-Value=1.5e-06)
          Length = 1977

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 104 ISEPQKYEPACKNLSFGRAR---NKQKQSSVPGPGTY 137
           IS+PQ+++PA K  S G  R     Q + ++PG G+Y
Sbjct: 13  ISKPQEFDPAFKPFSVGANRFRETAQAKEALPGAGSY 49


>SB_40141| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 10/102 (9%)

Query: 14  SQRFGKITVHPGLDPSGLYTIRPAGCDPCLYSPQPLYKIFEVNKNRKVDKDPWRYKSELE 73
           S R  +  VHP L+ +G  T      D  +  P+  + IF++   RK+ + PW  K +L+
Sbjct: 8   SHRAPRTRVHPPLELAGKKT-----WDNLV--PRVFWVIFDMASYRKLPRGPWGDKQKLQ 60

Query: 74  DWAKNLGYRNQKVLDLRKWQASLLGPAWHEISEPQKYEPACK 115
               N+  RN ++   +    ++L   + E  +  K E A K
Sbjct: 61  LSQLNITIRNSQI---KYASYAILFEGFWEFIDDAKTEEAAK 99


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 20  ITVHPGLDPSGLYTIRPAGCDPCLYSPQPLYKIFEVNKNRKVDKDPWRYKSELEDWAKNL 79
           + V P    S LY   P      LY   PLYK     K+  + K    YKS     + +L
Sbjct: 578 LQVLPLYKSSALYKSSPLYKSSSLYKSSPLYKSSPPYKSSSLYKSSSLYKSSSLYKSSSL 637

Query: 80  GYRNQKVLDLRKWQASLLGPAWHEISEPQKYEPACKNLSFGRARNKQKQSSVPGPGTYYK 139
            Y +     L K          ++ S   +  P CK+ S  ++    K SS+      YK
Sbjct: 638 -YESP---PLYKSSPLYKSSPPYKSSSLYRSSPLCKSSSLYKSSPLYKSSSLYEIVPLYK 693

Query: 140 ETPFRAPHGSHSTRPTFEREEPCRFKNSTL 169
            +P       + + P   +  P  +K+S L
Sbjct: 694 SSPLYKSSSLYKSSP-LHKSSPL-YKSSPL 721


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 150 HSTRPTFEREEPCRFKNSTLNWSLAPNRYN---IIDKNAIDQKHKKVVSLRGPYDLFTGK 206
           HS  P+        F+++T   ++ P+RYN       +A     ++ V+L+ PY +   +
Sbjct: 305 HSALPSRYNNHTAPFRHATTTITVLPSRYNNHTASSSHATTTIQRRSVTLQQPYSVLPSR 364

Query: 207 RDSSTIK-NHFNTSLKCSAAT 226
            ++ T    H  T+++  + T
Sbjct: 365 YNNHTASFRHDTTTIQRPSVT 385


>SB_55415| Best HMM Match : Death (HMM E-Value=1.3e-06)
          Length = 799

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 165 KNSTLNWSLAPNRYNIIDKNAI--------DQKHKKVVSLRGPYDLFTGKRDSSTIKNHF 216
           ++S LN++L    Y ++  N I        + K  K  +L     LF+ + + +T+K H 
Sbjct: 374 RDSLLNYALNYTEYQLLRPNNILYRRKARNNLKSSKYRTLTKNISLFSREIEVATLKEHI 433

Query: 217 NTSLKCSAATWPLALKGSLDKYVN 240
           + ++KC        L+G   K+V+
Sbjct: 434 SCAIKCFVFQNLAKLRGITRKFVD 457


>SB_12880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 61  VDKDPWRYKSEL-EDWAKNLGYRNQKVLDLRKWQASLLGPAWHE 103
           +D + +    EL +D+ KNLG + Q +L L+ W A+     W E
Sbjct: 137 LDSEEYNKMEELSKDFEKNLGPKLQFILQLKSWWATNYCTDWWE 180


>SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)
          Length = 264

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 3/79 (3%)

Query: 165 KNSTLNWSLAPNRYNIIDKNAIDQKHKKVVSLRGPY--DLFTGKR-DSSTIKNHFNTSLK 221
           ++ST N +++ NR  ++  + +     +   +   Y  DLF  +  + +T+K H + ++K
Sbjct: 82  QDSTANENVSLNRDKLLLSDEVTSLRARPFEISHSYEEDLFFSREIEVTTLKEHISCAIK 141

Query: 222 CSAATWPLALKGSLDKYVN 240
           C        L+G   K+V+
Sbjct: 142 CFVFQNLAKLRGITRKFVD 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,458
Number of Sequences: 59808
Number of extensions: 655713
Number of successful extensions: 1241
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 21
length of query: 353
length of database: 16,821,457
effective HSP length: 83
effective length of query: 270
effective length of database: 11,857,393
effective search space: 3201496110
effective search space used: 3201496110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)