GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001989-TA|BGIBMGA001989-PA|undefined
         (353 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative treh...    29   5.0  
AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans trehalose-6-p...    29   5.0  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    29   6.6  
AL117195-21|CAB55029.1|  490|Caenorhabditis elegans Hypothetical...    28   8.7  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 134 PGTYYKE-TPFRAPHGSHSTRPTFEREEPCRFKNSTLNWSLAPNRYNI 180
           P  YY+  TP+R  H     R   E E P   K S ++W+  P ++ +
Sbjct: 8   PDYYYRSYTPYRGHHFMPGARVGDETEPPAH-KKSIISWTSTPTKHKV 54


>Z93378-5|CAB07584.3| 1229|Caenorhabditis elegans Hypothetical
           protein F19H8.1 protein.
          Length = 1229

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 88  DLRKWQASLLGPAW-HEISEPQKYEPACKNLS-FGRARNKQKQSSVPGPGTYYKETPFRA 145
           D+ +W  + L P+W HE+  P + E      S   + RN ++Q      G   K  P R+
Sbjct: 777 DIERWSCAFLDPSWTHEVIRPTQVETLDDFFSLMMKTRNVRRQI----VGRVLKGIPIRS 832

Query: 146 PHGSHSTRPTFER-EEPCRFKNSTLNWSLAPN 176
            H + S R   E  E+ C+    T  +   P+
Sbjct: 833 -HFAISLRNAKESLEQICKPGTHTAEFKSGPD 863


>AJ811574-1|CAH18872.1| 1229|Caenorhabditis elegans putative
           trehalose 6-phosphatesynthase protein.
          Length = 1229

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 88  DLRKWQASLLGPAW-HEISEPQKYEPACKNLS-FGRARNKQKQSSVPGPGTYYKETPFRA 145
           D+ +W  + L P+W HE+  P + E      S   + RN ++Q      G   K  P R+
Sbjct: 777 DIERWSCAFLDPSWTHEVIRPTQVETLDDFFSLMMKTRNVRRQI----VGRVLKGIPIRS 832

Query: 146 PHGSHSTRPTFER-EEPCRFKNSTLNWSLAPN 176
            H + S R   E  E+ C+    T  +   P+
Sbjct: 833 -HFAISLRNAKESLEQICKPGTHTAEFKSGPD 863


>AJ512333-1|CAD54507.2| 1230|Caenorhabditis elegans
           trehalose-6-phosphate synthase protein.
          Length = 1230

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 8/92 (8%)

Query: 88  DLRKWQASLLGPAW-HEISEPQKYEPACKNLS-FGRARNKQKQSSVPGPGTYYKETPFRA 145
           D+ +W  + L P+W HE+  P + E      S   + RN ++Q      G   K  P R+
Sbjct: 777 DIERWSCAFLDPSWTHEVIRPTQVETLDDFFSLMMKTRNVRRQI----VGRVLKGIPIRS 832

Query: 146 PHGSHSTRPTFER-EEPCRFKNSTLNWSLAPN 176
            H + S R   E  E+ C+    T  +   P+
Sbjct: 833 -HFAISLRNAKESLEQICKPGTHTAEFKSGPD 863


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 2   VVSKILVPFGSSSQRFGKITVHPGLDPSGLYTIRPAGCDP-CLYSPQPLYKIFEVNKNRK 60
           VVS   V  G       ++ +H GL PS +Y +      P  +   +P+ +  +     K
Sbjct: 322 VVSLNAVKVGVCPPTVFQVQLH-GLQPSTIYRVSVRTKHPKAVLEQRPVERCVDFKTLPK 380

Query: 61  VDKDPWRYKSELEDWAKNLGYRNQKVL 87
            + + WR  S   D+  N  + N+K++
Sbjct: 381 SELN-WRSYSSFRDFLSNFYFENEKII 406


>AL117195-21|CAB55029.1|  490|Caenorhabditis elegans Hypothetical
           protein Y57A10A.25 protein.
          Length = 490

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 239 VNSHLGVMNKTNRSQPYRGRNALVDIVMSIRRPDDP 274
           +++HL  M + N+ + Y   NA   ++ S+++ D P
Sbjct: 452 IDAHLEAMVEINKQRDYIRMNAAATVIKSVQKEDTP 487


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 83  NQKVLDLRKWQASLLGPAWHEISEPQKYEPACKNLSFGRARNKQKQSSVPGPGTYYKETP 142
           N   +D + +  ++L P  H    PQ Y  A ++++   +   Q Q    GP  Y +   
Sbjct: 167 NTNGIDQKNFTHAMLSPPHHTSMTPQPYTEAMEHINGYMSPYDQAQGP-SGPSYYSQHHQ 225

Query: 143 FRAPHGSH 150
              PH  H
Sbjct: 226 SPPPHHHH 233


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,069
Number of Sequences: 27539
Number of extensions: 480238
Number of successful extensions: 845
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 7
length of query: 353
length of database: 12,573,161
effective HSP length: 82
effective length of query: 271
effective length of database: 10,314,963
effective search space: 2795354973
effective search space used: 2795354973
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)