GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001989-TA|BGIBMGA001989-PA|undefined
         (353 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   9.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 324 GIIGQGHRHVFLSKQDRTIGAIIPK 348
           G+   G+R+++LS  DR I A + K
Sbjct: 60  GVTLAGNRYIYLSGTDRVIRAKLGK 84


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 42  CLYSPQPLYKIFEVNKN--RKV 61
           CLYSP+    +F+ +KN  RKV
Sbjct: 754 CLYSPKIYIILFQPDKNIRRKV 775


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 224 AATWPLALKGSLDKYVNSHLGVMNKT 249
           AA+W  A   +LD+ V S LG ++ T
Sbjct: 471 AASWGSASDVTLDEAVKSPLGSVSST 496


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 42  CLYSPQPLYKIFEVNKN--RKV 61
           CLYSP+    +F+ +KN  RKV
Sbjct: 844 CLYSPKIYIILFQPDKNIRRKV 865


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 214 NHFNTSLKCSAATWPLALKGSLDKY 238
           N  + S   S + +PL LKGS D +
Sbjct: 385 NEIDFSFPDSVSDYPLELKGSPDGF 409


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.137    0.433 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,136
Number of Sequences: 429
Number of extensions: 6622
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 353
length of database: 140,377
effective HSP length: 58
effective length of query: 295
effective length of database: 115,495
effective search space: 34071025
effective search space used: 34071025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)