GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001988-TA|BGIBMGA001988-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (1384 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   2.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   2.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 467 SIAYILFLLMFTYTVLVKMNPTP-SWPEIYSICYILTFL 504
           S+A ++ LL+ T TVLV++N  P +W     +C  + F+
Sbjct: 111 SVADLMVLLVCTPTVLVEVNSRPETWVLGREMCKAVPFV 149


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 467 SIAYILFLLMFTYTVLVKMNPTP-SWPEIYSICYILTFL 504
           S+A ++ LL+ T TVLV++N  P +W     +C  + F+
Sbjct: 111 SVADLMVLLVCTPTVLVEVNSRPETWVLGREMCKAVPFV 149


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,438
Number of Sequences: 317
Number of extensions: 11949
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 2
length of query: 1384
length of database: 114,650
effective HSP length: 65
effective length of query: 1319
effective length of database: 94,045
effective search space: 124045355
effective search space used: 124045355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)