Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001988-TA|BGIBMGA001988-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
(1384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 33 0.21
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 32 0.49
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 30 2.0
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 29 4.5
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 29 6.0
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 29 6.0
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 29 6.0
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 28 7.9
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 33.5 bits (73), Expect = 0.21
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 837 EDMERLYDFEEECVEGYFREQEIK---LSNSIEERVRNTTDRVEHITTKMEDL 886
+D+E Y+ +EG F E+ + I ER NTT R+ HI+T++ L
Sbjct: 289 DDLEPQYEMTTITIEGDFEGVELAQKDIEAIINERTSNTTVRISHISTELYSL 341
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 535 DAGFIIFFLVGLTLRLREISRDVGRVIYCVDIIYWYLRILNILGVNKYLG 584
+ G +I LV T RL E S+ + R++ + YL + + LGVN+Y G
Sbjct: 429 ERGAVIESLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKG 478
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 778 HQVWMFQRFTVVMEYEQKPV---LPPPLIIFCHIYAVGKWVTRNVSHKRFQYDNGLKLFL 834
H +FQ+FT M+ + +PP + + A+ SH QY +GL+
Sbjct: 85 HSHGLFQKFTPYMDGVPQSTQCEIPPGATFYYNYTALQNGTYWVHSHDMSQYPDGLRTPF 144
Query: 835 EKEDMERLYDFEEECV 850
+E YD++EE +
Sbjct: 145 IINALEEPYDYDEEYI 160
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 888 QKANCQIQSMQSVEFRLRKLEDIAEQTMSHLAVIHRFMATHPSLVNRGS 936
Q AN QS+E + LED+ + ++ F+ HP+ +N+GS
Sbjct: 699 QNANTTYSKFQSLECQTN-LEDMLKHYDVEISPAKSFLEVHPNYLNKGS 746
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 844 DFEEECVEGYFREQEIKLSNSIEERVRNTTDRVEHITTKMEDLNQK-ANCQIQSMQSVEF 902
D E+ E F+ E + NSI++R + R + + +++ ++QK +S +S+
Sbjct: 173 DLLEQKTEARFQSIEQRF-NSIDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSCRSI-M 230
Query: 903 RLRKLEDIAEQTMSHLA 919
RKLE+ +LA
Sbjct: 231 LTRKLENTTRSDQGYLA 247
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 427 PSYRELPEYHPSEIKRMRPLRLRKKIYEFFTAPITKFWADSIAYILFLLMFTYTVLVKMN 486
P LP S+++ ++ R RK+I + F + + + LL T+L+ +N
Sbjct: 732 PEKCRLPHPPRSDLEALKLYRTRKEILDSFISTLNAYENQMHGERSILLELIRTILITIN 791
Query: 487 PT 488
PT
Sbjct: 792 PT 793
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 844 DFEEECVEGYFREQEIKLSNSIEERVRNTTDRVEHITTKMEDLNQK-ANCQIQSMQSVEF 902
D E+ E F+ E + NSI++R + R + + +++ ++QK +S +S+
Sbjct: 173 DLLEQKTEARFQSIEQRF-NSIDQRFNSIDRRFDSMEQRLDSMDQKMETIDARSCRSI-M 230
Query: 903 RLRKLEDIAEQTMSHLA 919
RKLE+ +LA
Sbjct: 231 LTRKLENTTRSDQGYLA 247
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 28.3 bits (60), Expect = 7.9
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 425 WEPSYRELPEYHPSEIKRMRPLRLRKKIYEFFTAP----ITKFWADSIAYILFLLMFTYT 480
W R++ PS+ +RPL LR Y+F F I ++LFLL Y
Sbjct: 1232 WLELRRKIKSMRPSKRPAIRPLGLRGLCYDFAVQKHGIWRRTFTGLYIVHLLFLLTIFYP 1291
Query: 481 VLVKMN-PTPSWPEIYSICYILTFLCEKI 508
+ S I SICY + +C K+
Sbjct: 1292 CPIAYTYVRNSIFLILSICYTIN-ICVKV 1319
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,714,411
Number of Sequences: 5004
Number of extensions: 228991
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 10
length of query: 1384
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1302
effective length of database: 1,952,150
effective search space: 2541699300
effective search space used: 2541699300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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