GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001988-TA|BGIBMGA001988-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (1384 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0867 - 28381891-28383018                                         31   4.9  
10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,241...    31   6.5  
05_05_0152 + 22762994-22763326,22763857-22763989,22764281-227643...    31   6.5  

>03_05_0867 - 28381891-28383018
          Length = 375

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 19/57 (33%), Positives = 25/57 (43%)

Query: 1321 LLPVPRQPSGDTNASSDLSLSHMVSENLPPRPSIVLDSSQLPRQRSAEQQQTQPPGP 1377
            LLP    PS    A++      +   + PPRPS    S       +A+QQ  QPP P
Sbjct: 29   LLPHADDPSAPPAAAAAARKLPVKRRSPPPRPSSPSSSDPASSDPAAKQQPQQPPPP 85


>10_01_0228 + 2417187-2418061,2418127-2418319,2419011-2419025,
            2419859-2419975
          Length = 399

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 1305 PSPLQPLLGDDACCEVLLPVPRQPSGDTNAS 1335
            P+P QPL  DD   E+LL +P  PS    AS
Sbjct: 11   PAPAQPLEDDDLLSEILLRLPPLPSSLPRAS 41


>05_05_0152 + 22762994-22763326,22763857-22763989,22764281-22764362,
            22764786-22764939,22765028-22765162
          Length = 278

 Score = 31.1 bits (67), Expect = 6.5
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 1319 EVLLPVPR-QPSGDTNASSDLSLSHMVSENLPPRPSIVLDSS----QLPRQRSAEQQQTQ 1373
            ++LL + R  PS   +  S L L H +    PP+PS     S    +LP +  A+   T 
Sbjct: 43   QILLQIVRGTPSSWAHLLSFLGLRHPLLSAAPPQPSPSPSPSVAFVRLPSEAPADASSTG 102

Query: 1374 PPGPSRPETM 1383
            PP P R  T+
Sbjct: 103  PPPPLRRLTV 112


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,778,078
Number of Sequences: 37544
Number of extensions: 1519501
Number of successful extensions: 4068
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4063
Number of HSP's gapped (non-prelim): 4
length of query: 1384
length of database: 14,793,348
effective HSP length: 91
effective length of query: 1293
effective length of database: 11,376,844
effective search space: 14710259292
effective search space used: 14710259292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 66 (30.7 bits)