GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001988-TA|BGIBMGA001988-PA|IPR002110|Ankyrin,
IPR005821|Ion transport
         (1384 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    25   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   5.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   7.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    24   9.9  

>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 283 ELLDYCYRQDDDQAQQLLTCELQNWSGQT--------CLSLAVTANHRALLAHPCSQIIL 334
           E L++   ++     + +TC+L ++ GQ         CLSL     H   +   C +   
Sbjct: 27  EPLEHFENEERADRHRRVTCDLLSFKGQVNDSACAANCLSLGKAGGHCEKVGCICRKTSF 86

Query: 335 ADLW 338
            DLW
Sbjct: 87  KDLW 90


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
            receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 1087 SSQHLAPRRQHSQTHSEPDNS 1107
            S +HL P+R HS+  S+ D S
Sbjct: 400  SEEHLTPKRFHSRAASKEDLS 420


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
            receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 1087 SSQHLAPRRQHSQTHSEPDNS 1107
            S +HL P+R HS+  S+ D S
Sbjct: 400  SEEHLTPKRFHSRAASKEDLS 420


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 7.5
 Identities = 21/78 (26%), Positives = 29/78 (37%)

Query: 1305 PSPLQPLLGDDACCEVLLPVPRQPSGDTNASSDLSLSHMVSENLPPRPSIVLDSSQLPRQ 1364
            PS  QP L  +      + VP      TN +     S      L       +DS     +
Sbjct: 1287 PSSPQPRLTVNHAYRDAVTVPGNNLIATNTTVSSGSSEDHRRPLSEHIYSSIDSDYSTLE 1346

Query: 1365 RSAEQQQTQPPGPSRPET 1382
            R+A +QQ  PP P  P +
Sbjct: 1347 RTAWRQQQPPPPPPPPSS 1364


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 862 SNSIEERVRNTTDRVEHITT-KMEDLNQKANCQIQSMQSVEFRLRK 906
           ++ ++E   +T+D +E ITT + E +  KA   +  +Q V    RK
Sbjct: 17  TSEVKEAQTSTSDEIEKITTVEEEKICHKAITPLDRLQRVVDWFRK 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 370,210
Number of Sequences: 429
Number of extensions: 15356
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 5
length of query: 1384
length of database: 140,377
effective HSP length: 66
effective length of query: 1318
effective length of database: 112,063
effective search space: 147699034
effective search space used: 147699034
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)