Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001987-TA|BGIBMGA001987-PA|undefined
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0998 - 23411422-23411649,23411897-23412625                       29   2.4  
11_01_0277 + 2060328-2061061,2061360-2061420,2061560-2061679,206...    27   9.6  
10_01_0314 + 3451167-3451715,3451844-3452058,3452254-3452256,345...    27   9.6  
01_01_0102 + 769442-770159,770710-770805,771340-771363,771470-77...    27   9.6  

>08_02_0998 - 23411422-23411649,23411897-23412625
          Length = 318

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 38  QAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPEL 72
           QA    A+G V+  GG HP  A+ V + HD  P+L
Sbjct: 121 QAPEALAHGGVQVVGG-HPVSAEEVGVDHDEAPDL 154


>11_01_0277 +
           2060328-2061061,2061360-2061420,2061560-2061679,
           2061947-2062112,2062229-2062635
          Length = 495

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 192 FAIIVPTKLKYNKHKEQIKQKNGAGL 217
           F I++  ++ YNKH E +  + G G+
Sbjct: 336 FVIVIMFQIPYNKHVESLHYRGGGGV 361


>10_01_0314 +
           3451167-3451715,3451844-3452058,3452254-3452256,
           3452602-3452803,3453353-3453418,3453505-3453747,
           3453831-3454196
          Length = 547

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 9/59 (15%)

Query: 134 TRQVGDALQLERSQRAGRVV--SIGIAPW------GIVEGANELIGKGRDVPYHAIASP 184
           +R  GDA  +ER +RAG VV  +  ++ W      GI  G +   G+G++ PY   A+P
Sbjct: 135 SRPAGDAGVVERLRRAGAVVLGTASLSEWCNFRAPGIPAGWSPRAGQGKN-PYVPSATP 192


>01_01_0102 +
           769442-770159,770710-770805,771340-771363,771470-772542
          Length = 636

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 119 TTGAWIFTGGTN--TGVTRQVGDALQLERSQRAGRVVSIGIAPWGIVEGANELIGKGRDV 176
           +TG  +FT  T+  T + +Q    + +       RVV+I I P+G  +  +  + +G  V
Sbjct: 216 STGETVFTWYTSNVTSICQQCEREVWITVGGTTVRVVTISIRPFGARDALDSAVARGPRV 275

Query: 177 PYHAIASPSFAQLRNFAIIVPTKL 200
              A A+ S       ++IV T L
Sbjct: 276 TIIA-ATSSVGTFIVLSLIVATAL 298


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,101,062
Number of Sequences: 37544
Number of extensions: 291837
Number of successful extensions: 484
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 483
Number of HSP's gapped (non-prelim): 4
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)