GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001987-TA|BGIBMGA001987-PA|undefined
         (230 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58147| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   8e-09
SB_16560| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)            42   4e-04
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)                      27   9.8  
SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)                      27   9.8  

>SB_58147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/43 (62%), Positives = 34/43 (79%)

Query: 61  YVRLSHDTRPELIVQLLTREWALDRPKLLITIQGGKANFDLQP 103
           Y+RL+HDT PEL+++LL  EWALD PKLLI++ GG  NF L P
Sbjct: 1   YIRLAHDTDPELVLRLLCGEWALDLPKLLISVTGGAKNFILSP 43


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 6/75 (8%)

Query: 119 TTGAWIFTGGTNTGVTRQVGDALQLE------RSQRAGRVVSIGIAPWGIVEGANELIGK 172
           TTGAWI TGGTNTGV + VG+A++ +         +  ++  IGIA WGIV+    L  K
Sbjct: 45  TTGAWILTGGTNTGVMKHVGEAVRGQMLTSHLNKYQQNQLYLIGIATWGIVDHKETLKEK 104

Query: 173 GRDVPYHAIASPSFA 187
              V YH  +S + A
Sbjct: 105 KDTVTYHMTSSMTSA 119


>SB_16560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 8  RCWCG-LSRTAHGANIVTANPG--EAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQ 60
          RC CG L +     + +   P   +AW    HT+  PTDAYG +EF G  +P++A+
Sbjct: 27 RCGCGRLDKDHSSRDALDTIPSTQQAWNVNMHTRLEPTDAYGQLEFSGAVYPSRAR 82


>SB_48434| Best HMM Match : Phycoerythr_ab (HMM E-Value=3.1)
          Length = 350

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 3/60 (5%)

Query: 126 TGGTNTGVTRQVGDALQLERSQRAG--RVVSIGIAPWGIVEGANELIGKGRDVPYHAIAS 183
           +GGTNTGV + VG+A++ ++       +V  IGIA WGIV+  ++LI + ++  Y A+ S
Sbjct: 102 SGGTNTGVMKHVGEAVKEQQLMFGSDTQVNVIGIATWGIVDKQSDLISE-KNGKYPALYS 160


>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 880

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 126 TGGTNTGV-TRQVGDALQLERSQRAGR--VVSIGIAPWGIVEGANELIGKGRDVPYHAIA 182
           T G   G+ TR +  A ++  S +AG   + S  I P  +  G  ++ G GR+  +H I 
Sbjct: 679 TFGLAGGIFTRDLNRAHRVIGSLQAGTCWINSFNITPVEVPFGGYKMSGFGREGFFHDIY 738

Query: 183 SPSFAQLRNFAIIVPTKLKYNKHK 206
           +    Q  N AI+V      N H+
Sbjct: 739 ASCDVQQLNLAILVDNN-SSNSHQ 761


>SB_5980| Best HMM Match : Stig1 (HMM E-Value=1.4)
          Length = 712

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 11  CGLSRTAHGANIVTANPGEAWVPARHTQAGPTDAYGTVEF 50
           CG +    G+++ TA+P  A  P +  ++GP   +G  EF
Sbjct: 268 CGTANHFSGSSMCTASPKSAQKPGQKPRSGP--VHGVEEF 305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,660,220
Number of Sequences: 59808
Number of extensions: 303870
Number of successful extensions: 415
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 6
length of query: 230
length of database: 16,821,457
effective HSP length: 80
effective length of query: 150
effective length of database: 12,036,817
effective search space: 1805522550
effective search space used: 1805522550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)