Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001987-TA|BGIBMGA001987-PA|undefined
(230 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 155 3e-38
Z80219-5|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 155 3e-38
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 152 2e-37
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 133 9e-32
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 117 6e-27
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 117 6e-27
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 117 6e-27
AC084159-19|AAK39354.1| 131|Caenorhabditis elegans Hypothetical... 29 3.7
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5 protein.
Length = 2032
Score = 155 bits (375), Expect = 3e-38
Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 29 EAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTREWALDRPKL 88
E W +HT + T+A+G VEFQGGPHP KAQYVR++ DT P I+ L W + P+L
Sbjct: 362 EKWSLRKHTVSLATNAFGQVEFQGGPHPYKAQYVRVNFDTEPAYIMSLFEHVWQISPPRL 421
Query: 89 LITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDALQLERSQR 148
+IT+ GG +NFDLQP TTGAWI T G +TGV + V AL+ +S +
Sbjct: 422 IITVHGGTSNFDLQPKLARVFRKGLLKAASTTGAWIITSGCDTGVVKHVAAALEGAQSAQ 481
Query: 149 AGRVVSIGIAPWGIVEGANELIGKGRDVPYHAIASPS-FAQLRN 191
++V IGIAPWG+++ + IG+ + VPY+ +S F L N
Sbjct: 482 RNKIVCIGIAPWGLLKKREDFIGQDKTVPYYPSSSKGRFTGLNN 525
>Z80219-5|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical
protein T01H8.5 protein.
Length = 2032
Score = 155 bits (375), Expect = 3e-38
Identities = 72/164 (43%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 29 EAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTREWALDRPKL 88
E W +HT + T+A+G VEFQGGPHP KAQYVR++ DT P I+ L W + P+L
Sbjct: 362 EKWSLRKHTVSLATNAFGQVEFQGGPHPYKAQYVRVNFDTEPAYIMSLFEHVWQISPPRL 421
Query: 89 LITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDALQLERSQR 148
+IT+ GG +NFDLQP TTGAWI T G +TGV + V AL+ +S +
Sbjct: 422 IITVHGGTSNFDLQPKLARVFRKGLLKAASTTGAWIITSGCDTGVVKHVAAALEGAQSAQ 481
Query: 149 AGRVVSIGIAPWGIVEGANELIGKGRDVPYHAIASPS-FAQLRN 191
++V IGIAPWG+++ + IG+ + VPY+ +S F L N
Sbjct: 482 RNKIVCIGIAPWGLLKKREDFIGQDKTVPYYPSSSKGRFTGLNN 525
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 152 bits (368), Expect = 2e-37
Identities = 71/164 (43%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Query: 29 EAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTREWALDRPKL 88
E W +HT + T+A+G VEFQGGPHP KAQYVR++ DT P I+ L W + P+L
Sbjct: 301 EKWSLRKHTVSLATNAFGQVEFQGGPHPYKAQYVRVNFDTEPAYIMSLFEHVWQISPPRL 360
Query: 89 LITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDALQLERSQR 148
+IT+ GG +NF LQP TTGAWI T G +TGV + V AL+ +S +
Sbjct: 361 IITVHGGTSNFXLQPKLARVFRKGLLKAASTTGAWIITSGCDTGVVKHVAAALEGAQSAQ 420
Query: 149 AGRVVSIGIAPWGIVEGANELIGKGRDVPYHAIASPS-FAQLRN 191
++V IGIAPWG+++ + IG+ + VPY+ +S F L N
Sbjct: 421 RNKIVCIGIAPWGLLKKREDFIGQDKTVPYYPSSSKGRFTGLNN 464
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
protein F54D1.5 protein.
Length = 1406
Score = 133 bits (322), Expect = 9e-32
Identities = 69/182 (37%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Query: 8 RCWCGLSRTAH--GANIVTANP-------GEAWVPARHTQAGPTDAYGTVEFQGGPHPTK 58
RC CG +AH + + P + W A +TQ TDA+GT+ FQGG H K
Sbjct: 110 RCGCGRPLSAHTPASTFFSTLPVHLLEKEQQTWTIANNTQTSTTDAFGTIVFQGGAHAHK 169
Query: 59 AQYVRLSHDTRPELIVQLLTREWALDRPKLLITIQGGKANFDLQPXXXXXXXXXXXXXXX 118
AQYVRLS+D+ P ++ L+ + W L+ P+L+IT+ GG +NF+L+
Sbjct: 170 AQYVRLSYDSEPLDVMYLMEKVWGLEAPRLVITVHGGMSNFELEERLGRLFRKGMLKAAQ 229
Query: 119 TTGAWIFTGGTNTGVTRQVGDALQLE--RSQRAGRVVSIGIAPWGIVEGANELIGKGRDV 176
TTGAWI T G ++GV R V AL ++ ++V+IGIAPWG+++ LI + V
Sbjct: 230 TTGAWIITSGLDSGVVRHVAKALDEAGISARMRSQIVTIGIAPWGVIKRKERLIRQNEHV 289
Query: 177 PY 178
Y
Sbjct: 290 YY 291
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
protein C05C12.3 protein.
Length = 1694
Score = 117 bits (282), Expect = 6e-27
Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 21 NIVTANPGEAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTRE 80
N V PG W HT+ PTDAYG + F+G H AQY R+S D+ P IV L+ +
Sbjct: 173 NEVNLTPGR-WSIQSHTEIVPTDAYGNIVFEGTAH--HAQYARISFDSDPRDIVHLMMKV 229
Query: 81 WALDRPKLLITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDA 140
W L PKL+ITI GG FDLQP +T AWI T G + GV + + A
Sbjct: 230 WKLKPPKLIITINGGLTKFDLQPKLARTFRKGIMKIAKSTDAWIITSGLDEGVVKHLDSA 289
Query: 141 LQLERSQRA-GRVVSIGIAPWGIVEGANELIGKGRDVPY 178
L + + VV+IGIA WG+++ + +GK V Y
Sbjct: 290 LHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTY 328
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 117 bits (282), Expect = 6e-27
Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 21 NIVTANPGEAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTRE 80
N V PG W HT+ PTDAYG + F+G H AQY R+S D+ P IV L+ +
Sbjct: 173 NEVNLTPGR-WSIQSHTEIVPTDAYGNIVFEGTAH--HAQYARISFDSDPRDIVHLMMKV 229
Query: 81 WALDRPKLLITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDA 140
W L PKL+ITI GG FDLQP +T AWI T G + GV + + A
Sbjct: 230 WKLKPPKLIITINGGLTKFDLQPKLARTFRKGIMKIAKSTDAWIITSGLDEGVVKHLDSA 289
Query: 141 LQLERSQRA-GRVVSIGIAPWGIVEGANELIGKGRDVPY 178
L + + VV+IGIA WG+++ + +GK V Y
Sbjct: 290 LHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTY 328
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 117 bits (282), Expect = 6e-27
Identities = 63/159 (39%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 21 NIVTANPGEAWVPARHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRPELIVQLLTRE 80
N V PG W HT+ PTDAYG + F+G H AQY R+S D+ P IV L+ +
Sbjct: 160 NEVNLTPGR-WSIQSHTEIVPTDAYGNIVFEGTAH--HAQYARISFDSDPRDIVHLMMKV 216
Query: 81 WALDRPKLLITIQGGKANFDLQPXXXXXXXXXXXXXXXTTGAWIFTGGTNTGVTRQVGDA 140
W L PKL+ITI GG FDLQP +T AWI T G + GV + + A
Sbjct: 217 WKLKPPKLIITINGGLTKFDLQPKLARTFRKGIMKIAKSTDAWIITSGLDEGVVKHLDSA 276
Query: 141 LQLERSQRA-GRVVSIGIAPWGIVEGANELIGKGRDVPY 178
L + + VV+IGIA WG+++ + +GK V Y
Sbjct: 277 LHDHGNHTSKNHVVAIGIASWGMLKQRSRFVGKDSTVTY 315
>AC084159-19|AAK39354.1| 131|Caenorhabditis elegans Hypothetical
protein Y73B3A.11 protein.
Length = 131
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 153 VSIGIAPWGIVEGANELIGKGRDVPYHAIASPSFAQ--LRNFAIIVPTKLKYNKHKEQIK 210
V + I P G+++ + G VP +A P +Q LR+ ++ K K K
Sbjct: 3 VQVDIQPIGLIQKNTSIPGLSI-VPKYATVLPISSQNDLRDPKAVIRDVTAAQKRKNLAK 61
Query: 211 QKNGAGLQRTPSQVDR 226
+KN LQ S +D+
Sbjct: 62 KKNQFSLQEKASTIDK 77
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,465,791
Number of Sequences: 27539
Number of extensions: 213635
Number of successful extensions: 388
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 8
length of query: 230
length of database: 12,573,161
effective HSP length: 79
effective length of query: 151
effective length of database: 10,397,580
effective search space: 1570034580
effective search space used: 1570034580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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