GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001987-TA|BGIBMGA001987-PA|undefined
         (230 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.0  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 57  TKAQYVRLSHDTRPELIVQLLTREWALDRPKLLITI 92
           T+ Q  R   +TR  L VQL+  E + ++ +LL+++
Sbjct: 205 TEFQQRRAFLETRQSLEVQLVIEEQSTEQERLLLSV 240


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 143 LERSQRAGRVVSIGIAPWG 161
           L ++ R  R+V+IGI  WG
Sbjct: 354 LWQNPRTKRLVNIGIISWG 372


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 26   NPGEAWVPARHTQAGPTDAYGTVEFQ 51
            N G+  +PA++T    TD    VE+Q
Sbjct: 1261 NHGKRTLPAKNTYFEATDLQQHVEYQ 1286


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 26   NPGEAWVPARHTQAGPTDAYGTVEFQ 51
            N G+  +PA++T    TD    VE+Q
Sbjct: 1257 NHGKRTLPAKNTYFEATDLQQHVEYQ 1282


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 35   RHTQAGPTDAYGTVEFQGGPHPTKAQYVRLSHDTRP 70
            R  Q G    +    + G PH T    V+  H  RP
Sbjct: 1053 RAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRP 1088


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,468
Number of Sequences: 429
Number of extensions: 2349
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 230
length of database: 140,377
effective HSP length: 56
effective length of query: 174
effective length of database: 116,353
effective search space: 20245422
effective search space used: 20245422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)