GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    25   0.48 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    25   0.48 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    25   0.48 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.0  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   3.4  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   3.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   7.9  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 69  DGSHNCSDSDASPGC 83
           DG+ NC D +  PGC
Sbjct: 206 DGTGNCEDPEDVPGC 220


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 69  DGSHNCSDSDASPGC 83
           DG+ NC D +  PGC
Sbjct: 206 DGTGNCEDPEDVPGC 220


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
          homeodomain protein protein.
          Length = 232

 Score = 24.6 bits (51), Expect = 0.48
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 46 VSPSLPKNEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRS 88
          V   L K E  E E R SD D +D +    D D     +LS S
Sbjct: 16 VESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRESLSPS 58


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 66  DKNDGSHNCSDSDASPGCTLSR 87
           DK+  +   SD D+ PG  L R
Sbjct: 197 DKSTDNEGVSDCDSEPGIPLKR 218


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 157 PGDVTMMPKNTEMSLLVYLFGF 178
           PGD  +    ++M +L  +FGF
Sbjct: 11  PGDKNLHKSYSKMLILAQIFGF 32


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 157 PGDVTMMPKNTEMSLLVYLFGF 178
           PGD  +    ++M +L  +FGF
Sbjct: 11  PGDKNLHKSYSKMLILAQIFGF 32


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 136 DPRPRVPNRGPTLPYCG 152
           +P P + + GP LP  G
Sbjct: 152 EPNPSIIDPGPALPPAG 168


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,999
Number of Sequences: 317
Number of extensions: 1073
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 182
length of database: 114,650
effective HSP length: 53
effective length of query: 129
effective length of database: 97,849
effective search space: 12622521
effective search space used: 12622521
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)