GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   2.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.6  
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    25   8.7  

>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 52  KNEPFETEPRPSDSDKNDGSHNCSDS 77
           KN   E EP+PS   +N+G   C DS
Sbjct: 143 KNFKIE-EPKPSGDFRNEGPKQCDDS 167


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 139 PRVPNRGPTLPYCG-PGVRPGDVTMMPK 165
           P+ PNRGP++P    P V P    +  +
Sbjct: 236 PKFPNRGPSIPSASVPPVPPSSYVLQQR 263


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 136 DPRPRVPNRGPTLPYCGPGVRPGDVTMMPKNTEMSLLVYLFGF-PRI 181
           DP  R  N GP LP  GP +   D  +   N E  L  YL  F P++
Sbjct: 163 DPDAR-DNYGPYLPNVGPKISGADRVLRYNNIE-DLKYYLDTFGPKV 207


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,549
Number of Sequences: 5004
Number of extensions: 21952
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 4
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)