GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0593 + 19078264-19078609,19078724-19082256                       29   2.2  
06_03_0616 + 22772629-22773051                                         28   5.1  
05_05_0312 - 24009265-24009582,24009779-24009848,24010050-240101...    28   5.1  

>08_02_0593 + 19078264-19078609,19078724-19082256
          Length = 1292

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 57   ETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDIRSC 96
            E + R +D    D SHNC D D S G   + S  N    C
Sbjct: 1156 EADKRTNDEYLFDISHNCDDEDCSKGRPSTISSLNSSGGC 1195


>06_03_0616 + 22772629-22773051
          Length = 140

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 52  KNEPFETEPRPSDSDKNDGSHNCSDSDASPGC 83
           +  P++ +    D D + G  +C D D S GC
Sbjct: 102 RRHPWKRQICGGDDDDDGGDGHCEDDDCSDGC 133


>05_05_0312 -
           24009265-24009582,24009779-24009848,24010050-24010107,
           24010227-24010269,24010354-24010430,24011013-24011227,
           24013167-24013186,24013667-24013680,24014219-24014303
          Length = 299

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 57  ETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLK 90
           E+    S  +K D S + S++D++PG  ++ +LK
Sbjct: 147 ESPAEGSKDEKKDSSDSLSNTDSAPGMQINEALK 180


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,560,963
Number of Sequences: 37544
Number of extensions: 159983
Number of successful extensions: 295
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 3
length of query: 182
length of database: 14,793,348
effective HSP length: 78
effective length of query: 104
effective length of database: 11,864,916
effective search space: 1233951264
effective search space used: 1233951264
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)