GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)          29   3.0  
SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)               29   3.0  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   3.9  
SB_33722| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   5.2  
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    28   5.2  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   6.9  
SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 141 VPNRGPTLPYCGPGVRPGDVTMMPKN 166
           VP+ G T+PY GP V P + T +P N
Sbjct: 98  VPSNGTTVPYNGPTV-PSNGTTVPSN 122


>SB_59055| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.55)
          Length = 330

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 48 PSLPKNE-----PFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDI 93
          P+ P+ E     P +T PRP    K        +++ SP   +  SLK+D+
Sbjct: 5  PTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNVEASLKSDV 55


>SB_43856| Best HMM Match : Laminin_I (HMM E-Value=0.057)
          Length = 976

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 48  PSLPKNE-----PFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDI 93
           P+ P+ E     P +T PRP    K        +++ SP   +  SLK+D+
Sbjct: 443 PTSPRKESRPPSPRKTSPRPQSPKKEPKQTRSVETETSPQSNVEASLKSDV 493


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 74  CSDSDASPGCTLSRSLKNDIRSCLGACRW 102
           C DSDA   C   R  ++  + C   CR+
Sbjct: 487 CLDSDAIDKCQTDRDCQDQFKCCFDGCRY 515


>SB_33722| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 124

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 58 TEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDIRSC 96
          T P  +D   NDGS+ C      PG TL  +   DI  C
Sbjct: 52 TCPASADCVNNDGSYTCK---CKPGYTLVNNTCEDIDEC 87


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 51  PKNEPFETEPRPSDSDKNDGSHNCSDSDAS 80
           P+ EP  ++PR   ++K+ G +  S  DAS
Sbjct: 656 PRQEPTPSKPREEKAEKSPGEYRLSALDAS 685


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 67   KNDGSHNCSDSDASPGCTLSRSLKNDIRSCLGAC 100
            K DG  +C+D     GC   +  K+  R   G C
Sbjct: 3147 KCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRC 3180


>SB_16447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 50  LPKNEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKN 91
           LPK +P    P+  DSD    S  C  +    G TLSR+L N
Sbjct: 513 LPKQKP----PKAIDSDIRPISLTCQVAKLMEGFTLSRALPN 550


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,187,414
Number of Sequences: 59808
Number of extensions: 189407
Number of successful extensions: 550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 13
length of query: 182
length of database: 16,821,457
effective HSP length: 78
effective length of query: 104
effective length of database: 12,156,433
effective search space: 1264269032
effective search space used: 1264269032
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)