GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U23515-10|AAK21456.1|  188|Caenorhabditis elegans Mediator prote...    27   7.9  

>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 62   PSDSDKNDGSHNCSDSDASPGCTLSRSLKNDI 93
            P + D+ND  H   D DAS G T    ++ D+
Sbjct: 2006 PFNGDRNDSCHCSEDGDASAGLTRFNKVRIDL 2037


>Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 62   PSDSDKNDGSHNCSDSDASPGCTLSRSLKNDI 93
            P + D+ND  H   D DAS G T    ++ D+
Sbjct: 2006 PFNGDRNDSCHCSEDGDASAGLTRFNKVRIDL 2037


>U49956-8|AAA93436.1|  765|Caenorhabditis elegans Hypothetical
           protein M03A1.6a protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  KNEPFET-EPRPSDSDKNDGSHNC-SDSDASPGCTLSRSL 89
           KN+  +T + R    D+N+    C SD DA  GC+  RS+
Sbjct: 592 KNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRSM 631


>U49956-7|AAL32232.1|  753|Caenorhabditis elegans Hypothetical
           protein M03A1.6b protein.
          Length = 753

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  KNEPFET-EPRPSDSDKNDGSHNC-SDSDASPGCTLSRSL 89
           KN+  +T + R    D+N+    C SD DA  GC+  RS+
Sbjct: 580 KNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRSM 619


>U49956-6|ABD94087.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6d protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  KNEPFET-EPRPSDSDKNDGSHNC-SDSDASPGCTLSRSL 89
           KN+  +T + R    D+N+    C SD DA  GC+  RS+
Sbjct: 589 KNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRSM 628


>U49956-5|ABD94086.1|  762|Caenorhabditis elegans Hypothetical
           protein M03A1.6c protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 52  KNEPFET-EPRPSDSDKNDGSHNC-SDSDASPGCTLSRSL 89
           KN+  +T + R    D+N+    C SD DA  GC+  RS+
Sbjct: 589 KNKDDKTADARSGGDDENEDEDECDSDEDARSGCSSPRSM 628


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)

Query: 137 PRPRVP-NRGPTLPYCG 152
           P PR P N+GP+LPY G
Sbjct: 142 PTPRTPVNQGPSLPYAG 158


>U23515-10|AAK21456.1|  188|Caenorhabditis elegans Mediator protein
           11 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 54  EPFETEPRPSDSDKNDGSHNCSD--SDASPGCTLSRS 88
           +P   EP+ ++ D+ DGS + ++  +D +P  T++ S
Sbjct: 116 DPTSDEPQTTEEDEEDGSDDLNEDGADGAPSSTVTSS 152


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,701,134
Number of Sequences: 27539
Number of extensions: 132114
Number of successful extensions: 222
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 12,573,161
effective HSP length: 77
effective length of query: 105
effective length of database: 10,452,658
effective search space: 1097529090
effective search space used: 1097529090
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)