GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001986-TA|BGIBMGA001986-PA|undefined
         (182 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53320.1 68416.m05883 expressed protein                             35   0.028
At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid t...    29   1.4  
At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related ...    28   3.2  
At2g42710.1 68415.m05289 ribosomal protein L1 family protein           27   7.4  
At1g77300.1 68414.m09002 SET domain-containing protein similar t...    27   7.4  
At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family p...    27   9.8  

>At3g53320.1 68416.m05883 expressed protein
          Length = 553

 Score = 35.1 bits (77), Expect = 0.028
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 45  RVSPSLPK-NEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDIRS 95
           R  P LPK   PF++  R SD+ KN+ + +CS  ++    + S S K  I S
Sbjct: 294 RAKPVLPKPGVPFKSSSRSSDASKNEMTSSCSSLESCASASSSASHKPSIDS 345


>At2g48140.1 68415.m06026 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 200

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 137 PRPRVPNRGPTLPYCGPGVRPGDVTMMPKNTEMS 170
           P P  P  GPT P    G+RP D  M P     S
Sbjct: 149 PAPDTPADGPTGPTTKSGIRPVDQPMQPTGLAQS 182


>At1g17450.1 68414.m02137 ATP phosphoribosyltransferase -related
           contains weak similarity to Swiss-Prot:P10366 ATP
           phosphoribosyltransferase [Escherichia coli]
          Length = 1402

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 56  FETEPRPSDSDKNDGSHNCSDSDASPGCTLSR 87
           F T  R +DS+ N G  +CS SDA     L+R
Sbjct: 91  FATPGRLTDSESNSGVPDCSPSDAKRRHVLTR 122


>At2g42710.1 68415.m05289 ribosomal protein L1 family protein
          Length = 415

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 51 PKNEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDI 93
          P + PF+  PR   S  +  S + S SD++P    + S K  +
Sbjct: 19 PFSSPFQQIPRLFSSSSSSSSSSSSSSDSNPSPDSNESRKKAV 61


>At1g77300.1 68414.m09002 SET domain-containing protein similar to
           huntingtin interacting protein 1 [Homo sapiens]
           GI:12697196; contains Pfam profile PF00856: SET domain
          Length = 1759

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 47  SPSLPKNEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKNDIRSCL 97
           S ++P + P   EP+ S  + N+G HN S  + +   + +R+++    SCL
Sbjct: 515 SNNIPYDGPPHHEPQRSQGNLNNGEHNRSSHNGNVEGS-NRNIQASSGSCL 564


>At3g12660.1 68416.m01578 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857;
          Length = 255

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 47  SPSLPKNEPFETEPRPSDSDKNDGSHNCSDSDASPGCTLSRSLKN 91
           +P+     P  + PRP++S  +DG        ++PG       +N
Sbjct: 178 APTASPLSPVSSPPRPAESPNDDGQDFDEPPSSAPGAAADEPSEN 222


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,556,182
Number of Sequences: 28952
Number of extensions: 122300
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 6
length of query: 182
length of database: 12,070,560
effective HSP length: 77
effective length of query: 105
effective length of database: 9,841,256
effective search space: 1033331880
effective search space used: 1033331880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)